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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.426273 (78 seq.)
>W131216870
ATWE01000024
Alphaproteobacteria
Ensifer sp. USDA 6670 [ATWE]
11695
11768
+
Cys
GCA
[ENA]
¡û
>W131218845
ATYB01000014
Alphaproteobacteria
Sinorhizobium arboris LMG 14919 [ATYB]
1453611
1453684
+
Cys
GCA
[ENA]
¡û
>W131219146
ATYH01000035
Alphaproteobacteria
Sinorhizobium meliloti CIAM1775 [ATYH]
44817
44744
-
Cys
GCA
[ENA]
¡û
>W131219465
ATYP01000028
Alphaproteobacteria
Sinorhizobium meliloti RRl128 [ATYP]
33556
33629
+
Cys
GCA
[ENA]
¡û
>W131220169
ATZD01000037
Alphaproteobacteria
Sinorhizobium meliloti Mlalz-1 [ATZD]
46426
46353
-
Cys
GCA
[ENA]
¡û
>W1711353313
MDDW01000005
Alphaproteobacteria
Rhizobium sp. LCM 4573 [MDDW]
279706
279633
-
Cys
GCA
[ENA]
¡û
>C171105032
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3236077
3236004
-
Cys
GCA
-
¡û
>C171123338
CP021793
Alphaproteobacteria
Sinorhizobium meliloti USDA1157 [CP021793]
1379521
1379594
+
Cys
GCA
-
¡û
>C171123467
CP021800
Alphaproteobacteria
Sinorhizobium meliloti USDA1021 [CP021800]
773027
772954
-
Cys
GCA
-
¡û
>C171123520
CP021804
Alphaproteobacteria
Sinorhizobium meliloti T073 [CP021804]
359213
359140
-
Cys
GCA
-
¡û
>C171123621
CP021812
Alphaproteobacteria
Sinorhizobium meliloti M270 [CP021812]
1321209
1321136
-
Cys
GCA
-
¡û
>C171123706
CP021822
Alphaproteobacteria
Sinorhizobium meliloti KH46 [CP021822]
2370786
2370859
+
Cys
GCA
-
¡û
>C171123776
CP021825
Alphaproteobacteria
Sinorhizobium meliloti KH35c [CP021825]
1844196
1844123
-
Cys
GCA
-
¡û
>C171123809
CP021829
Alphaproteobacteria
Sinorhizobium meliloti HM006 [CP021829]
2223325
2223398
+
Cys
GCA
-
¡û
>w018779
AATP01000007
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
120351
120276
-
Cys
GCA
[ENA]
¡û
>WENV181188765
OEOE01351736
[OEOE] activated sludge metagenome; Activated Sludge
177
104
-
Cys
GCA
[ENA]
¢þ
>W141151978
AXBL01000005
Alphaproteobacteria
Sinorhizobium meliloti BO21CC [AXBL]
348910
348983
+
Cys
GCA
[ENA]
¡û
>W141152041
AXBM01000113
Alphaproteobacteria
Sinorhizobium meliloti AK58 [AXBM]
14824
14897
+
Cys
GCA
[ENA]
¡û
>W141180670
AYGY02000104
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
25192
25265
+
Cys
GCA
[ENA]
¡û
>W141207560
AZNW01000057
Alphaproteobacteria
Sinorhizobium meliloti WSM1022 [AZNW]
1444
1517
+
Cys
GCA
[ENA]
¡û
>W141255034
CBTS010000264
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CBTS]
3568
3641
+
Cys
GCA
[ENA]
¡û
>WENV183625875
OOGG01062400
[OOGG] marine metagenome; sea ice
151
78
-
Cys
GCA
[ENA]
¢þ
>WENV170190974
CEPC01196015
[CEPC] marine metagenome genome assembly TARA_064_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6
79
+
Cys
GCA
[ENA]
¢þ
>WENV170499931
CEVT01273114
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
256
329
+
Cys
GCA
[ENA]
¢þ
>WENV170790303
MDSV01064107
[MDSV] marine metagenome; seawater
8363
8290
-
Cys
GCA
[ENA]
¢þ
>WENV170856102
MDTA01217650
[MDTA] marine metagenome; seawater
585
512
-
Cys
GCA
[ENA]
¢þ
>C181037819
CP019485
Alphaproteobacteria
Sinorhizobium meliloti B401 [CP019485]
1709560
1709633
+
Cys
GCA
-
¡û
>C181037877
CP019488
Alphaproteobacteria
Sinorhizobium meliloti B399 [CP019488]
2030513
2030586
+
Cys
GCA
-
¡û
>W1910183047
BJNJ01000096
Alphaproteobacteria
Sinorhizobium meliloti NBRC 14782 [BJNJ]
14629
14702
+
Cys
GCA
[ENA]
¡û
>W1911412937
NWVT01000010
Alphaproteobacteria
Ensifer sp. T2_8 [NWVT]
53546
53619
+
Cys
GCA
[ENA]
¡û
>W1911798312
QYRN01000001
Alphaproteobacteria
Aureimonas flava M2BS4Y-1 [QYRN]
253179
253252
+
Cys
GCA
[ENA]
¡û
>W1810192890
PKMZ01000001
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
863338
863411
+
Cys
GCA
[ENA]
¡û
>W1810357253
PVNM01000292
Alphaproteobacteria
Sinorhizobium meliloti BM806 [PVNM]
44643
44570
-
Cys
GCA
[ENA]
¡û
>W1810365572
PVUG01000005
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
131397
131324
-
Cys
GCA
[ENA]
¡û
>W1810403707
PYJO01000018
Alphaproteobacteria
Mesorhizobium loti LMG 6125 [PYJO]
25711
25638
-
Cys
GCA
[ENA]
¡û
>W1810403733
PYJO01000051
Alphaproteobacteria
Mesorhizobium loti LMG 6125 [PYJO]
36697
36770
+
Cys
GCA
[ENA]
¡û
>W1810448701
PZMI01000009
Alphaproteobacteria
Sinorhizobium meliloti AK555 [PZMI]
109392
109465
+
Cys
GCA
[ENA]
¡û
>W1810448752
PZMJ01000022
Alphaproteobacteria
Sinorhizobium meliloti CXM1-105 [PZMJ]
15019
15092
+
Cys
GCA
[ENA]
¡û
>W1810534751
QDAH01000113
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
6053
6126
+
Cys
GCA
[ENA]
¡û
>W1810594565
QGDB01000002
Alphaproteobacteria
Falsochrobactrum shanghaiense HN4 [QGDB]
327213
327140
-
Cys
GCA
[ENA]
¡û
>W1810889086
QURL01000007
Alphaproteobacteria
Fulvimarina endophytica 85 [QURL]
50948
51021
+
Cys
GCA
[ENA]
¡û
>C151072522
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
3363618
3363691
+
Cys
GCA
[Ensembl]
¡û
>C151101642
HG938353
Alphaproteobacteria
Neorhizobium galegae bv. orientalis str. HAMBI 540 [HG938353]
1418960
1419033
+
Cys
GCA
[Ensembl]
¡û
>C151101690
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
1341119
1341192
+
Cys
GCA
[Ensembl]
¡û
>W1510053021
CCRJ01000014
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
75101
75028
-
Cys
GCA
[ENA]
¡û
>W10126554
AEDG01000050
Alphaproteobacteria
Sinorhizobium meliloti BL225C [AEDG]
32298
32371
+
Cys
GCA
[ENA]
¡û
>W10126573
AEDH01000004
Alphaproteobacteria
Sinorhizobium meliloti AK83 [AEDH]
226379
226452
+
Cys
GCA
[ENA]
¡û
>W1511344064
JRFJ01000001
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
1455461
1455388
-
Cys
GCA
[ENA]
¡û
>C11120781
CP002781
Alphaproteobacteria
Sinorhizobium meliloti AK83 [CP002781, CP002782, CP002783]
1517550
1517623
+
Cys
GCA
[Ensembl]
¡û
>C11120911
CP001830
Alphaproteobacteria
Sinorhizobium meliloti SM11 [CP001830]
1918481
1918408
-
Cys
GCA
[Ensembl]
¡û
>W11133815
AEDG01000050
Alphaproteobacteria
Sinorhizobium meliloti BL225C [AEDG]
32298
32371
+
Cys
GCA
[ENA]
¡û
>W11133834
AEDH01000004
Alphaproteobacteria
Sinorhizobium meliloti AK83 [AEDH]
226379
226452
+
Cys
GCA
[ENA]
¡û
>C161070361
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
1706817
1706890
+
Cys
GCA
[Ensembl]
¡û
>W121021508
AGVV01000015
Alphaproteobacteria
Sinorhizobium meliloti CCNWSX0020 [AGVV]
88055
87982
-
Cys
GCA
[ENA]
¡û
>W121103578
AKZR01000177
Alphaproteobacteria
Sinorhizobium meliloti H1 [AKZR]
13353
13280
-
Cys
GCA
[ENA]
¡û
>W121103642
AKZS01000439
Alphaproteobacteria
Sinorhizobium meliloti C0438LL [AKZS]
7602
7529
-
Cys
GCA
[ENA]
¡û
>W121103705
AKZU01000036
Alphaproteobacteria
Sinorhizobium meliloti AK75 [AKZU]
13333
13260
-
Cys
GCA
[ENA]
¡û
>W121103844
AKZW01000173
Alphaproteobacteria
Sinorhizobium meliloti AE608H [AKZW]
14623
14696
+
Cys
GCA
[ENA]
¡û
>W121103902
AKZX01000571
Alphaproteobacteria
Sinorhizobium meliloti A0643DD [AKZX]
5171
5098
-
Cys
GCA
[ENA]
¡û
>W121103930
AKZY01000159
Alphaproteobacteria
Sinorhizobium meliloti A0641M [AKZY]
6857
6784
-
Cys
GCA
[ENA]
¡û
>W121103976
AKZZ01000004
Alphaproteobacteria
Sinorhizobium meliloti 5A14 [AKZZ]
167962
168035
+
Cys
GCA
[ENA]
¡û
>W121104040
AKZZ01000144
Alphaproteobacteria
Sinorhizobium meliloti 5A14 [AKZZ]
120941
121014
+
Cys
GCA
[ENA]
¡û
>W1610056593
BBWK01000002
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
17033
17106
+
Cys
GCA
[ENA]
¡û
>W1610056812
BBWO01000005
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
427546
427473
-
Cys
GCA
[ENA]
¡û
>W1610056910
BBWQ01000017
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
42340
42267
-
Cys
GCA
[ENA]
¡û
>W1610057008
BBWS01000044
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
93798
93725
-
Cys
GCA
[ENA]
¡û
>C131010050
CP003933
Alphaproteobacteria
Sinorhizobium meliloti GR4 [CP003933]
1722027
1722100
+
Cys
GCA
[Ensembl]
¡û
>C131013067
CP004140
Alphaproteobacteria
Sinorhizobium meliloti 2011 [CP004140]
1750091
1750164
+
Cys
GCA
[Ensembl]
¡û
>C131020434
HE995405
Alphaproteobacteria
Sinorhizobium meliloti Rm41 [HE995405]
1389120
1389193
+
Cys
GCA
[Ensembl]
¡û
>W1710015477
AQQS01000005
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
94066
93993
-
Cys
GCA
[ENA]
¡û
>W1710053292
BBWK01000002
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
17033
17106
+
Cys
GCA
[ENA]
¡û
>W1710053511
BBWO01000005
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
427546
427473
-
Cys
GCA
[ENA]
¡û
>W1710053609
BBWQ01000017
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
42340
42267
-
Cys
GCA
[ENA]
¡û
>W1710053707
BBWS01000044
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
93798
93725
-
Cys
GCA
[ENA]
¡û
>W1710524467
FNIT01000003
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
384250
384177
-
Cys
GCA
[ENA]
¡û
>W1710541782
FNYP01000004
Alphaproteobacteria
Sinorhizobium meliloti [FNYP]
226707
226780
+
Cys
GCA
[ENA]
¡û
>W1710588135
FQZC01000003
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
400282
400355
+
Cys
GCA
[ENA]
¡û
>W1710606279
FWXR01000004
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
246164
246091
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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