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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.426418 (56 seq.)
>W1710869708
LMJY01000001
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
337090
337017
-
Gln
CTG
[ENA]
¡û
>W1710912875
LNRZ01000003
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
215611
215684
+
Gln
CTG
[ENA]
¡û
>W1711051714
LRSE01000013
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
43635
43708
+
Gln
CTG
[ENA]
¡û
>W1711072901
LSIA01000153
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
12185
12258
+
Gln
CTG
[ENA]
¡û
>W1711261678
LYWY01000037
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
78347
78420
+
Gln
CTG
[ENA]
¡û
>W1711386355
MEFG01000013
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
69205
69132
-
Gln
CTG
[ENA]
¡û
>W1711386388
MEFH01000001
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
6931
7004
+
Gln
CTG
[ENA]
¡û
>W1711387016
MEGC01000034
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
79491
79564
+
Gln
CTG
[ENA]
¡û
>W1711505661
MKVS01000047
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
2467
2394
-
Gln
CTG
[ENA]
¡û
>W1711705040
MSQB01000017
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
48061
47988
-
Gln
CTG
[ENA]
¡û
>C171056585
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
3128499
3128426
-
Gln
CTG
-
¡û
>WENV180020293
FTCZ01001250
[FTCZ] metagenome; soil
9503
9430
-
Gln
CTG
[ENA]
¢þ
>WENV180284905
OBID01154482
[OBID] metagenome; sludge
186
259
+
Gln
CTG
[ENA]
¢þ
>W141077942
ATHL01000041
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
7073
7146
+
Gln
CTG
[ENA]
¡û
>WENV181222967
OFDC01000869
[OFDC] hot springs metagenome; Water
5385
5312
-
Gln
CTG
[ENA]
¢þ
>WENV181226850
OFDN01000171
[OFDN] hot springs metagenome; Water
51525
51452
-
Gln
CTG
[ENA]
¢þ
>WENV183726784
PJTO01000169
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
22949
22876
-
Gln
CTG
[ENA]
¢þ
>WENV183729048
PJTQ01003241
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1148
1221
+
Gln
CTG
[ENA]
¢þ
>WENV183733251
PJTY01000502
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
2515
2442
-
Gln
CTG
[ENA]
¢þ
>WENV183738178
PJUD01105261
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
51
124
+
Gln
CTG
[ENA]
¢þ
>WENV183739071
PJUE01001413
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
843
770
-
Gln
CTG
[ENA]
¢þ
>WENV170993371
MWWB01279690
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
397
324
-
Gln
CTG
[ENA]
¢þ
>W141484958
JFYZ01000029
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
77381
77454
+
Gln
CTG
[ENA]
¡û
>C191000579
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
2581855
2581782
-
Gln
CTG
-
¡û
>C191057063
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
766491
766418
-
Gln
CTG
-
¡û
>W09100293
AAAV03000001
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
694264
694337
+
Gln
CTG
[ENA]
¡û
>W09102974
AAIP01000017
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
12858
12931
+
Gln
CTG
[ENA]
¡û
>W1910651538
LYMM01000100
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
741
668
-
Gln
CTG
[ENA]
¡û
>W1910934247
NIWD01000008
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
306103
306176
+
Gln
CTG
[ENA]
¡û
>W1810107973
PHFW01000003
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
306212
306285
+
Gln
CTG
[ENA]
¡û
>W1810195684
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
2152508
2152435
-
Gln
CTG
[ENA]
¡û
>SRA1005815
SRR014587.209369
Metagenomic analysis of viruses in reclaimed water (SRP000673)
137
64
-
Gln
CTG
[SRA]
>C151048378
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
2530247
2530174
-
Gln
CTG
[Ensembl]
¡û
>W1510012830
BBNP01000011
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
86969
87042
+
Gln
CTG
[ENA]
¡û
>W1510024394
CCBH010000167
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
25731
25804
+
Gln
CTG
[ENA]
¡û
>C11116207
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
388259
388186
-
Gln
CTG
[Ensembl]
¡û
>W1511324669
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
1526097
1526024
-
Gln
CTG
[ENA]
¡û
>W1511357024
JRVC01000022
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
12656
12729
+
Gln
CTG
[ENA]
¡û
>W1511398037
JTDI01000007
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
324324
324397
+
Gln
CTG
[ENA]
¡û
>C161040502
CP012199
Alphaproteobacteria
Sphingopyxis granuli TFA [CP012199]
4434252
4434179
-
Gln
CTG
[Ensembl]
¡û
>W121009691
AGFM01000018
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
74541
74614
+
Gln
CTG
[ENA]
¡û
>W121081093
AKFJ01000118
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
134461
134534
+
Gln
CTG
[ENA]
¡û
>W121119261
ALVC01000589
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
925
852
-
Gln
CTG
[ENA]
¡û
>W1610071390
BCUA01000077
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
17421
17494
+
Gln
CTG
[ENA]
¡û
>W1610077014
BCZE01000072
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
34554
34627
+
Gln
CTG
[ENA]
¡û
>W1610732054
LMJY01000001
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
337090
337017
-
Gln
CTG
[ENA]
¡û
>W1610771234
LNRZ01000003
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
215611
215684
+
Gln
CTG
[ENA]
¡û
>W1610892843
LRSE01000013
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
43635
43708
+
Gln
CTG
[ENA]
¡û
>W1610912161
LSIA01000153
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
12185
12258
+
Gln
CTG
[ENA]
¡û
>W1611023653
LYWY01000037
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
78347
78420
+
Gln
CTG
[ENA]
¡û
>WENV080967
ABEF01017642
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
805
878
+
Gln
CTG
[ENA]
>W1710068755
BCUA01000077
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
17421
17494
+
Gln
CTG
[ENA]
¡û
>W1710074703
BCZE01000072
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
34554
34627
+
Gln
CTG
[ENA]
¡û
>W1710508005
FMVR01000015
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
15934
16007
+
Gln
CTG
[ENA]
¡û
>W1710602901
FUYP01000026
Alphaproteobacteria
Sphingopyxis flava [FUYP]
370
297
-
Gln
CTG
[ENA]
¡û
>W1710605999
FWXL01000006
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
297343
297416
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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