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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.426579 (32 seq.)
>WENV180197997
OBAB01053115
[OBAB] human gut metagenome; faeces
45
116
+
Asn
GTT
[ENA]
¢þ
>WENV180324335
OBKR01294923
[OBKR] human gut metagenome; feces
60
134
+
Asn
GTT
[ENA]
¢þ
>WENV181134164
OEGF01028738
[OEGF] human metagenome; G_DNA_Stool
528
602
+
Asn
GTT
[ENA]
¢þ
>WENV181196530
OEQY01000079
[OEQY] metagenome; Caecal content
13007
13081
+
Asn
GTT
[ENA]
¢þ
>WENV182525772
OIWT01004357
[OIWT] human gut metagenome; faeces
11525
11451
-
Asn
GTT
[ENA]
¢þ
>WENV182528714
OIWU01007201
[OIWU] human gut metagenome; faeces
2797
2723
-
Asn
GTT
[ENA]
¢þ
>WENV182614836
OJKC01000490
[OJKC] metagenome; faeces
132
206
+
Asn
GTT
[ENA]
¢þ
>WENV182627072
OJKP01054534
[OJKP] metagenome; faeces
82
156
+
Asn
GTT
[ENA]
¢þ
>WENV183045372
OLGE01009791
[OLGE] human gut metagenome; faeces
60
134
+
Asn
GTT
[ENA]
¢þ
>WENV183518775
OMNQ01052782
[OMNQ] human gut metagenome; feces
78
4
-
Asn
GTT
[ENA]
¢þ
>WENV183590008
OOCW01035272
[OOCW] human gut metagenome; human gut
624
697
+
Asn
GTT
[ENA]
¢þ
>WENV183649023
OQVS01082166
[OQVS] human gut metagenome; human gut
345
271
-
Asn
GTT
[ENA]
¢þ
>WENV183651068
OQVT01069249
[OQVT] human gut metagenome; human gut
154
228
+
Asn
GTT
[ENA]
¢þ
>WENV170109144
CECA01063945
[CECA] gut metagenome; human stools
47
121
+
Asn
GTT
[ENA]
¢þ
>C191128908
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1844151
1844222
+
Asn
GTT
-
¡û
>C191128911
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
1844404
1844475
+
Asn
GTT
-
¡û
>C191128939
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
4370108
4370037
-
Asn
GTT
-
¡û
>C191128949
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
3960712
3960639
-
Asn
GTT
-
¡û
>C191128953
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
3959700
3959627
-
Asn
GTT
-
¡û
>W1810071067
PEDL01000001
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
26498
26571
+
Asn
GTT
[ENA]
¡û
>W1810071099
PEDL01000016
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
90152
90079
-
Asn
GTT
[ENA]
¡û
>W1810071126
PEDL01000041
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
10385
10312
-
Asn
GTT
[ENA]
¡û
>W1810071131
PEDL01000042
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
431
504
+
Asn
GTT
[ENA]
¡û
>C11105551
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
1234393
1234464
+
Asn
GTT
[Ensembl]
¡û
>C11105554
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
1234646
1234717
+
Asn
GTT
[Ensembl]
¡û
>C11105585
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3620552
3620481
-
Asn
GTT
[Ensembl]
¡û
>C11105595
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3254001
3253928
-
Asn
GTT
[Ensembl]
¡û
>C11105599
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3252989
3252916
-
Asn
GTT
[Ensembl]
¡û
>W1610046358
BBCG01000130
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
846
919
+
Asn
GTT
[ENA]
¡û
>W1710043154
BBCG01000130
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
846
919
+
Asn
GTT
[ENA]
¡û
>W1710505726
FMTX01000013
Bacillota
Lachnospiraceae bacterium YSD2013 [FMTX]
171766
171693
-
Asn
GTT
[ENA]
¡û
>W1710505729
FMTX01000016
Bacillota
Lachnospiraceae bacterium YSD2013 [FMTX]
94458
94385
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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