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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4266 (44 seq.)
>W1710880353
LMSH01000002
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
257789
257883
+
SeC(p)
TCA
[ENA]
¡û
>W131172164
ARGS01000040
Actinomycetota
Arthrobacter sp. 162MFSha1.1 [ARGS]
53409
53315
-
SeC(p)
TCA
[ENA]
¡û
>WENV180016383
FSUT01000543
[FSUT] metagenome; soil
7730
7824
+
SeC
TCA
[ENA]
¡û
>WENV180019646
FTCF01000229
[FTCF] metagenome; soil
1925
2019
+
SeC
TCA
[ENA]
¡û
>W141213517
AZSB01000214
Actinomycetota
Arthrobacter sp. I3 [AZSB]
1138
1232
+
SeC(p)
TCA
[ENA]
¡û
>C191188244
CP041187
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502771 [CP041187]
3348673
3348579
-
Sec
TCA
-
¡û
>C191188521
CP041198
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502770 [CP041198]
1475642
1475736
+
Sec
TCA
-
¡û
>W1910182085
BJMO01000028
Actinomycetota
Sinomonas atrocyanea NBRC 12956 [BJMO]
44242
44148
-
Sec
TCA
[ENA]
¡û
>W1911594968
PNFZ01000004
Actinomycetota
Brevibacterium luteolum UMB0680 [PNFZ]
36023
36117
+
Sec
TCA
[ENA]
¡û
>W1810677246
QKMO01000004
Actinomycetota
Arthrobacter sp. RC1.1 241 [QKMO]
277010
276916
-
Sec
TCA
[ENA]
¡û
>W1810695557
QLNP01000069
Actinomycetota
Arthrobacter globiformis mrc11 [QLNP]
7248
7154
-
Sec
TCA
[ENA]
¡û
>W2010095734
BJMO01000028
Actinomycetota
Sinomonas atrocyanea NBRC 12956 [BJMO]
44242
44148
-
SeC
TCA
[ENA]
¡û
>W2010418363
FXWZ01000003
Actinomycetota
Brevibacterium ihuae CV3 [FXWZ]
11606
11513
-
SeC
TCA
[ENA]
¡û
>W2010598907
JABFMW010000006
Actinomycetota
Pseudarthrobacter sp. C4D7 [JABFMW]
96656
96562
-
SeC
TCA
[ENA]
¡û
>W2011204015
PNFZ01000004
Actinomycetota
Brevibacterium luteolum UMB0680 [PNFZ]
36023
36117
+
SeC
TCA
[ENA]
¡û
>W2011654546
SOBD01000010
Actinomycetota
Arthrobacter sp. 1704 [SOBD]
112593
112499
-
SeC
TCA
[ENA]
¡û
>W2011688763
SSCL01000002
Actinomycetota
Sinomonas sp. NEAU-HV1 [SSCL]
26271
26365
+
SeC
TCA
[ENA]
¡û
>W2012017933
VFMU01000001
Actinomycetota
Arthrobacter sp. IMM11 [VFMU]
3119312
3119406
+
SeC
TCA
[ENA]
¡û
>W2012018148
VFMX01000001
Actinomycetota
Arthrobacter sp. GZK-1 [VFMX]
3883265
3883171
-
SeC
TCA
[ENA]
¡û
>W2012018235
VFMZ01000001
Actinomycetota
Arthrobacter sp. SLBN-53 [VFMZ]
1086741
1086835
+
SeC
TCA
[ENA]
¡û
>W2012019355
VFNR01000001
Actinomycetota
Arthrobacter sp. 32-OD9 [VFNR]
3813863
3813769
-
SeC
TCA
[ENA]
¡û
>W2012046503
VIVE01000001
Actinomycetota
Arthrobacter sp. AG367 [VIVE]
349317
349411
+
SeC
TCA
[ENA]
¡û
>W2110029438
BMKT01000032
Actinomycetota
Sinomonas atrocyanea CGMCC 1.1891 [BMKT]
9992
10086
+
SeC
TCA
[ENA]
¡û
>W2110054564
BNCM01000001
Actinomycetota
Sinomonas sp. KCTC 49339 [BNCM]
240694
240600
-
SeC
TCA
[ENA]
¡û
>W2110156300
JAAOXD010000008
Actinomycetota
Arthrobacter ipsi IA7 [JAAOXD]
52462
52368
-
SeC
TCA
[ENA]
¡û
>W2110445637
JAERRC010000020
Actinomycetota
Sinomonas sp. JC656 [JAERRC]
240694
240600
-
SeC
TCA
[ENA]
¡û
>W2110590747
JAHBOI010000001
Actinomycetota
Paenarthrobacter sp. DKR-5 [JAHBOI]
23289
23383
+
SeC
TCA
[ENA]
¡û
>W2110603324
JAHHIO010000047
Actinomycetota
Arthrobacter sp. GN70 [JAHHIO]
10615
10521
-
SeC
TCA
[ENA]
¡û
>W2110677496
JAIFZQ010000017
Actinomycetota
Arthrobacter sp. MAHUQ-56 [JAIFZQ]
99740
99646
-
SeC
TCA
[ENA]
¡û
>C201063095
CP035810
Actinomycetota
Brevibacterium luteolum NEB1784 [CP035810]
2426387
2426481
+
SeC
TCA
-
¡û
>C211025416
AP024660
Actinomycetota
Arthrobacter sp. NicSoilC5 [AP024660]
560200
560294
+
SeC
TCA
-
¡û
>C231193668
CP084550
Actinomycetota
Arthrobacter sp. FW306-07-I [CP084550]
2054733
2054827
+
SeC
TCA
-
¡û
>C231193717
CP084556
Actinomycetota
Arthrobacter sp. FW306-05-C [CP084556]
2051809
2051903
+
SeC
TCA
-
¡û
>C231193839
CP084561
Actinomycetota
Arthrobacter sp. FW305-BF8 [CP084561]
2399972
2399878
-
SeC
TCA
-
¡û
>C231499778
CP104877
Actinomycetota
Paenarthrobacter sp. JL.01a [CP104877]
2071681
2071775
+
SeC
TCA
-
¡û
>C231550382
CP113505
Actinomycetota
Arthrobacter sp. FX8 [CP113505]
1362004
1362098
+
SeC
TCA
-
¡û
>C241180183
CP066362
Actinomycetota
Pseudarthrobacter defluvii E5 [CP066362]
1904693
1904787
+
SeC
TCA
-
¡û
>C241368128
CP141830
Actinomycetota
Pseudarthrobacter sp. LT1 [CP141830]
2246654
2246748
+
SeC
TCA
-
¡û
>W1511489594
JWTB01000005
Actinomycetota
Pseudarthrobacter phenanthrenivorans SWC37 [JWTB]
171072
171166
+
SeC
TCA
[ENA]
¡û
>W1511523728
JYCN01000016
Actinomycetota
Arthrobacter sp. SPG23 [JYCN]
109870
109964
+
SeC
TCA
[ENA]
¡û
>W1610742606
LMSF01000012
Actinomycetota
Arthrobacter sp. Soil761 [LMSF]
75603
75697
+
SeC(p)
TCA
[ENA]
¡û
>W1610742699
LMSH01000002
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
257789
257883
+
SeC(p)
TCA
[ENA]
¡û
>W1610742751
LMSI01000019
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
163723
163817
+
SeC(p)
TCA
[ENA]
¡û
>W1710521089
FNGC01000010
Actinomycetota
Arthrobacter sp. ok362 [FNGC]
216846
216752
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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