This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.42825 (88 seq.)
>W1711413541
MGWI01000005
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
14493
14405
-
Leu
TAA
[ENA]
¡û
>W131229111
AUGN01000007
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
41694
41782
+
Leu
TAA
[ENA]
¡û
>W131229204
AUGP01000028
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
39376
39464
+
Leu
TAA
[ENA]
¡û
>w023499
AAXX01000002
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
252187
252277
+
Leu
TAA
[ENA]
¡û
>WENV180208614
OBAJ01008976
[OBAJ] marine metagenome; Coastal water
128
42
-
Leu
TAA
[ENA]
¡û
>WENV180284537
OBID01053371
[OBID] metagenome; sludge
652
738
+
Leu
TAA
[ENA]
¡û
>WENV181173020
OEIV011136464
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
170
84
-
Leu
TAA
[ENA]
¡û
>WENV181836411
OGVJ01006540
[OGVJ] freshwater metagenome; freshwater
1089
1175
+
Leu
TAA
[ENA]
¡û
>WENV183736934
PJUD01000106
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
88004
88090
+
Leu
TAA
[ENA]
¡û
>WENV183736935
PJUD01000106
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
88151
88237
+
Leu
TAA
[ENA]
¡û
>WENV183738704
PJUE01000117
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
87921
88007
+
Leu
TAA
[ENA]
¡û
>WENV183738705
PJUE01000117
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
88068
88154
+
Leu
TAA
[ENA]
¡û
>WENV183739927
PJUF01000078
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
87947
88033
+
Leu
TAA
[ENA]
¡û
>WENV183739928
PJUF01000078
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
88094
88180
+
Leu
TAA
[ENA]
¡û
>WENV170559411
CXWL01122121
[CXWL] groundwater metagenome; biofilm material
132
220
+
Leu
TAA
[ENA]
¡û
>C181196549
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
1773041
1773127
+
Leu
TAA
-
¡û
>C181202227
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
3588098
3588012
-
Leu
TAA
-
¡û
>W141702878
JMLU01000001
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
173072
172986
-
Leu
TAA
[ENA]
¡û
>W1910577970
JUIW01000012
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
88028
87942
-
Leu
TAA
[ENA]
¡û
>W1910728174
MGWJ01000010
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
5053
5139
+
Leu
TAA
[ENA]
¡û
>W1910728175
MGWJ01000010
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
5193
5279
+
Leu
TAA
[ENA]
¡û
>SRA1004775
SRR006906.134338
metagenomic water samples (SRP000427)
48
136
+
Leu
TAA
[SRA]
>W1810695888
QLSV01000007
Bacteroidota
Flavobacterium lacus CGMCC 1.12504 [QLSV]
32973
33059
+
Leu
TAA
[ENA]
¡û
>W1810762861
QQAR01000011
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
102620
102534
-
Leu
TAA
[ENA]
¡û
>W2010449256
JAACYB010000006
Bacteroidota
Flavobacterium sp. LaA7.5 [JAACYB]
38497
38583
+
Leu
TAA
[ENA]
¡û
>W2010490151
JAAJBV010000004
Bacteroidota
Flavobacterium sp. TWA-26 [JAAJBV]
36784
36870
+
Leu
TAA
[ENA]
¡û
>W2010516188
JAAMPT010000207
Bacteroidota
Flavobacterium sp. SE-s27 [JAAMPT]
33757
33843
+
Leu
TAA
[ENA]
¡û
>W2010522762
JAANOQ010000002
Bacteroidota
Flavobacterium sp. F372 [JAANOQ]
221474
221388
-
Leu
TAA
[ENA]
¡û
>W2010522763
JAANOQ010000002
Bacteroidota
Flavobacterium sp. F372 [JAANOQ]
221334
221248
-
Leu
TAA
[ENA]
¡û
>W2010587680
JABBHH010000009
Bacteroidota
Flavobacterium sp. SG815 [JABBHH]
113544
113458
-
Leu
TAA
[ENA]
¡û
>W2010762207
JUIW01000012
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
88028
87942
-
Leu
TAA
[ENA]
¡û
>W2010861604
MGWJ01000010
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
5193
5279
+
Leu
TAA
[ENA]
¡û
>W2011196634
PJQW01000007
Bacteroidota
Flavobacterium sp. J27 [PJQW]
63202
63288
+
Leu
TAA
[ENA]
¡û
>W2011196635
PJQW01000007
Bacteroidota
Flavobacterium sp. J27 [PJQW]
63509
63595
+
Leu
TAA
[ENA]
¡û
>W2011480261
RQTJ01000013
Bacteroidota
Flavobacterium sp. YIM 102796 [RQTJ]
31826
31912
+
Leu
TAA
[ENA]
¡û
>W2011480263
RQTJ01000013
Bacteroidota
Flavobacterium sp. YIM 102796 [RQTJ]
32067
32153
+
Leu
TAA
[ENA]
¡û
>W2011480265
RQTJ01000013
Bacteroidota
Flavobacterium sp. YIM 102796 [RQTJ]
32308
32394
+
Leu
TAA
[ENA]
¡û
>W2011480267
RQTJ01000013
Bacteroidota
Flavobacterium sp. YIM 102796 [RQTJ]
32505
32591
+
Leu
TAA
[ENA]
¡û
>W2011480268
RQTJ01000013
Bacteroidota
Flavobacterium sp. YIM 102796 [RQTJ]
32633
32719
+
Leu
TAA
[ENA]
¡û
>W2011531121
SBII01000012
Bacteroidota
Flavobacterium sp. 1E403 [SBII]
117762
117676
-
Leu
TAA
[ENA]
¡û
>W2011532191
SBKN01000001
Bacteroidota
Flavobacterium sp. WWJ-16 [SBKN]
162722
162636
-
Leu
TAA
[ENA]
¡û
>W2011616433
SKBO01000008
Bacteroidota
Flavobacterium arcticum KCTC 42668 [SKBO]
125633
125547
-
Leu
TAA
[ENA]
¡û
>W2011616475
SKBP01000008
Bacteroidota
Flavobacterium sp. SaA2.12 [SKBP]
104993
104907
-
Leu
TAA
[ENA]
¡û
>W2011651490
SNZC01000002
Bacteroidota
Flavobacterium cheniae DSM 22462 [SNZC]
182539
182453
-
Leu
TAA
[ENA]
¡û
>W2012011067
VEVQ02000007
Bacteroidota
Flavobacterium jejuense EC11 [VEVQ]
80932
81018
+
Leu
TAA
[ENA]
¡û
>W2012011068
VEVQ02000007
Bacteroidota
Flavobacterium jejuense EC11 [VEVQ]
81511
81597
+
Leu
TAA
[ENA]
¡û
>W2012063490
VJVZ01000002
Bacteroidota
Flavobacterium sp. ZT4R6 [VJVZ]
304861
304775
-
Leu
TAA
[ENA]
¡û
>W2012081527
VLKM01000003
Bacteroidota
Flavobacterium cheniae CGMCC 1.6844 [VLKM]
54523
54437
-
Leu
TAA
[ENA]
¡û
>W2012198241
VWSG01000004
Bacteroidota
Flavobacterium sp. SNL9 [VWSG]
32993
33079
+
Leu
TAA
[ENA]
¡û
>W2012198243
VWSG01000004
Bacteroidota
Flavobacterium sp. SNL9 [VWSG]
33191
33277
+
Leu
TAA
[ENA]
¡û
>W2012332481
WIBH01000002
Bacteroidota
Flavobacterium sp. LMO6 [WIBH]
97376
97462
+
Leu
TAA
[ENA]
¡û
>W2012332520
WIBI01000002
Bacteroidota
Flavobacterium sp. LMO9 [WIBI]
97376
97462
+
Leu
TAA
[ENA]
¡û
>W2012332581
WIBJ01000031
Bacteroidota
Flavobacterium sp. LMO8 [WIBJ]
411211
411297
+
Leu
TAA
[ENA]
¡û
>W2012408856
WOWP01000061
Bacteroidota
Flavobacterium rakeshii JCM 17928 [WOWP]
35652
35738
+
Leu
TAA
[ENA]
¡û
>W2012444931
WUMN01000004
Bacteroidota
Flavobacterium sp. Sd200 [WUMN]
281933
281847
-
Leu
TAA
[ENA]
¡û
>W2030068306
WWEP01000008
Bacteroidota
Flavobacterium sp. MK4S-17 [WWEP]
39187
39273
+
Leu
TAA
[ENA]
¡û
>W2110022377
BMFG01000001
Bacteroidota
Flavobacterium orientale CGMCC 1.12506 [BMFG]
30937
31023
+
Leu
TAA
[ENA]
¡û
>W2110263189
JACTAC010000054
Bacteroidota
Flavobacterium macrobrachii an-8 [JACTAC]
13709
13623
-
Leu
TAA
[ENA]
¡û
>W2110315546
JADFTZ010000001
Bacteroidota
Flavobacterium aquaticum 1Y8A [JADFTZ]
344068
343982
-
Leu
TAA
[ENA]
¡û
>W2110595584
JAHDIU010000004
Bacteroidota
Flavobacterium sp. D11R37 [JAHDIU]
347429
347343
-
Leu
TAA
[ENA]
¡û
>C201116711
CP042831
Bacteroidota
Flavobacterium sp. XS-5 [CP042831]
400881
400795
-
Leu
TAA
-
¡û
>C211026271
AP024749
Bacteroidota
Flavobacterium sp. KK2020170 [AP024749]
316088
316002
-
Leu
TAA
-
¡û
>C211026272
AP024749
Bacteroidota
Flavobacterium sp. KK2020170 [AP024749]
315940
315854
-
Leu
TAA
-
¡û
>C231171978
CP081495
Bacteroidota
Flavobacterium sp. CC-SYL302 [CP081495]
1874626
1874712
+
Leu
TAA
-
¡û
>C231171980
CP081495
Bacteroidota
Flavobacterium sp. CC-SYL302 [CP081495]
1874830
1874916
+
Leu
TAA
-
¡û
>C231171981
CP081495
Bacteroidota
Flavobacterium sp. CC-SYL302 [CP081495]
1874953
1875039
+
Leu
TAA
-
¡û
>C231171983
CP081495
Bacteroidota
Flavobacterium sp. CC-SYL302 [CP081495]
1875140
1875226
+
Leu
TAA
-
¡û
>C231256926
CP089095
Bacteroidota
Flavobacterium cyclinae KSM-R2A25 [CP089095]
485641
485727
+
Leu
TAA
-
¡û
>C231256927
CP089095
Bacteroidota
Flavobacterium cyclinae KSM-R2A25 [CP089095]
485788
485874
+
Leu
TAA
-
¡û
>C231270813
CP090145
Bacteroidota
Flavobacterium sediminilitoris YSM-43 [CP090145]
546480
546394
-
Leu
TAA
-
¡û
>C231270814
CP090145
Bacteroidota
Flavobacterium sediminilitoris YSM-43 [CP090145]
545717
545631
-
Leu
TAA
-
¡û
>C231524571
CP109993
Bacteroidota
Flavobacterium sp. N1719 [CP109993]
1181632
1181718
+
Leu
TAA
-
¡û
>C231524721
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
2056966
2057052
+
Leu
TAA
-
¡û
>C231524722
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
2101864
2101950
+
Leu
TAA
-
¡û
>C231525057
CP110005
Bacteroidota
Flavobacterium sp. N2270 [CP110005]
1129942
1130028
+
Leu
TAA
-
¡û
>C231525058
CP110005
Bacteroidota
Flavobacterium sp. N2270 [CP110005]
1130192
1130278
+
Leu
TAA
-
¡û
>C231525344
CP110010
Bacteroidota
Flavobacterium sp. N501239 [CP110010]
546473
546387
-
Leu
TAA
-
¡û
>C231525345
CP110010
Bacteroidota
Flavobacterium sp. N501239 [CP110010]
545710
545624
-
Leu
TAA
-
¡û
>W2130016483
JACSOD020000461
Bacteroidota
Flavobacterium macrobrachii LMG 25203 [JACSOD]
12161
12247
+
Leu
TAA
[ENA]
¡û
>W1511526866
JYGZ01000009
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
14092
14180
+
Leu
TAA
[ENA]
¡û
>W1511526867
JYGZ01000009
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
14822
14910
+
Leu
TAA
[ENA]
¡û
>C161042832
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
2856866
2856954
+
Leu
TAA
-
¡û
>W1610535023
JRLV01000016
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
94101
94013
-
Leu
TAA
[ENA]
¡û
>W1610535151
JRLY01000077
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
42
130
+
Leu
TAA
[ENA]
¡û
>W1710584567
FQVQ01000009
Bacteroidota
Flavobacterium fontis [FQVQ]
11928
11840
-
Leu
TAA
[ENA]
¡û
>W1710593811
FRYK01000001
Bacteroidota
Flavobacterium cucumis [FRYK]
371372
371284
-
Leu
TAA
[ENA]
¡û
>W1710637259
JRLV01000016
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
94101
94013
-
Leu
TAA
[ENA]
¡û
>W1710637387
JRLY01000077
Bacteroidota
Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790 [JRLY]
42
130
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK