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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.428916 (64 seq.)
>W1711184711
LWMH01000001
Bacillota
Paenibacillus glucanolyticus [LWMH]
2439584
2439657
+
Thr
CGT
[ENA]
¡û
>W1711270738
LZEL01000105
Bacillota
Paenibacillus polymyxa [LZEL]
25075
25149
+
Thr
CGT
[ENA]
¡û
>W1711677010
MRTF01000003
Bacillota
Paenibacillus lautus [MRTF]
32424
32351
-
Thr
CGT
[ENA]
¡û
>W1711677550
MRTP01000006
Bacillota
Paenibacillus rhizosphaerae [MRTP]
209863
209934
+
Thr
CGT
[ENA]
¡û
>W1711679810
MRVI01000002
Bacillota
Paenibacillus ihbetae IHBB 9951 [MRVI]
1132720
1132645
-
Thr
CGT
[ENA]
¡û
>W1711979143
NDGJ01000009
Bacillota
Paenibacillus apiarius [NDGJ]
102393
102467
+
Thr
CGT
[ENA]
¡û
>W1711979267
NDGK01000039
Bacillota
Paenibacillus thiaminolyticus [NDGK]
147310
147236
-
Thr
CGT
[ENA]
¡û
>C171038769
CP015423
Bacillota
Paenibacillus polymyxa J [CP015423]
3378765
3378838
+
Thr
CGT
-
¡û
>W131239121
BALG01000125
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
10017
9943
-
Thr
CGT
[ENA]
¡û
>W141034848
ALJV01000197
Bacillota
Paenibacillus polymyxa WLY78 [ALJV]
15343
15269
-
Thr
CGT
[ENA]
¡û
>W141072407
ASPT01000069
Bacillota
Paenibacillus sp. FSL R5-808 [ASPT]
18933
18860
-
Thr
CGT
[ENA]
¡û
>W141072636
ASPW01000051
Bacillota
Paenibacillus sp. FSL H8-457 [ASPW]
23006
22932
-
Thr
CGT
[ENA]
¡û
>W141073228
ASRZ01000119
Bacillota
Paenibacillus polymyxa 1-43 [ASRZ]
49209
49135
-
Thr
CGT
[ENA]
¡û
>WENV181801241
OGSB01000016
[OGSB] human gut metagenome; fecal sample 5 from infant 3
80367
80441
+
Thr
CGT
[ENA]
¢þ
>WENV181810376
OGSV01000020
[OGSV] human gut metagenome; fecal sample 4 from infant 3
80491
80565
+
Thr
CGT
[ENA]
¢þ
>W08010678
ABRG01000001
Bacillota
Paenibacillus sp. Y412MC10 Y412MC10 [ABRG]
626788
626862
+
Thr
CGT
[ENA]
¡û
>WENV181822736
OGUH01000016
[OGUH] human gut metagenome; fecal sample 3 from infant 3
80306
80380
+
Thr
CGT
[ENA]
¢þ
>W141277417
JAEO01000056
Bacillota
Bacillus sp. J13 [JAEO]
3838
3909
+
Thr
CGT
[ENA]
¡û
>C181021517
CP016809
Bacillota
Paenibacillus ihbetae IHBB 9852 [CP016809]
2571433
2571358
-
Thr
CGT
-
¡û
>C181124429
CP025957
Bacillota
Paenibacillus polymyxa HY96-2 [CP025957]
551988
552061
+
Thr
CGT
-
¡û
>C191089255
CP032412
Bacillota
Paenibacillus lautus E7593-69 [CP032412]
5800291
5800218
-
Thr
CGT
-
¡û
>C191120101
CP034141
Bacillota
Paenibacillus sp. M-152 [CP034141]
650447
650520
+
Thr
CGT
-
¡û
>C191125198
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
1531876
1531950
+
Thr
CGT
-
¡û
>C191183197
CP040829
Bacillota
Paenibacillus polymyxa ZF129 [CP040829]
1296264
1296190
-
Thr
CGT
-
¡û
>W1910154896
BIMC01000036
Bacillota
Paenibacillus glucanolyticus NBRC 15330 [BIMC]
17008
16935
-
Thr
CGT
[ENA]
¡û
>W1910154998
BIMF01000029
Bacillota
Paenibacillus lautus NBRC 15380 [BIMF]
19446
19520
+
Thr
CGT
[ENA]
¡û
>W1910155145
BIMI01000012
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
15900
15826
-
Thr
CGT
[ENA]
¡û
>W1910340270
FTLT01000007
Bacillota
Paenibacillus bouchesdurhonensis Marseille-P3071 [FTLT]
767154
767228
+
Thr
CGT
[ENA]
¡û
>W1910505925
FYER01000012
Bacillota
Paenibacillus aquistagni St-s [FYER]
142308
142382
+
Thr
CGT
[ENA]
¡û
>W1910664027
MBRK01000001
Bacillota
Paenibacillus sp. SSG-1 [MBRK]
5734107
5734036
-
Thr
CGT
[ENA]
¡û
>W1911144773
NPBY01000045
Bacillota
Paenibacillus campinasensis 7537-G1 [NPBY]
26044
26117
+
Thr
CGT
[ENA]
¡û
>W1911424005
NXFP01000003
Bacillota
Paenibacillus lautus BHU3 [NXFP]
23655
23581
-
Thr
CGT
[ENA]
¡û
>W1911533318
OKQQ01000010
Bacillota
Paenibacillus faecalis Marseille-P3787 [OKQQ]
51813
51738
-
Thr
CGT
[ENA]
¡û
>W1911809767
QYZD01000001
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
234318
234392
+
Thr
CGT
[ENA]
¡û
>W1810050194
PCZT01000024
Bacillota
Paenibacillus sp. AR247 [PCZT]
141125
141054
-
Thr
CGT
[ENA]
¡û
>W1810057081
PDHM01000005
Bacillota
Paenibacillus sp. EZ-K15 [PDHM]
280378
280452
+
Thr
CGT
[ENA]
¡û
>W1810225535
POVT01000013
Bacillota
Paenibacillus polymyxa KCCM 40454 [POVT]
26849
26923
+
Thr
CGT
[ENA]
¡û
>W1810463512
PZZP01000002
Bacillota
Desmospora activa DSM 45169 [PZZP]
215665
215591
-
Thr
CGT
[ENA]
¡û
>W1810683252
QKVW01000185
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
7114
7188
+
Thr
CGT
[ENA]
¡û
>W1810698044
QLYT01000059
Bacillota
Paenibacillus sp. MDMC362 MDMC362 [QLYT]
33757
33831
+
Thr
CGT
[ENA]
¡û
>W1810787589
QRDU01000003
Bacillota
Paenibacillus sp. VMFN-D1 [QRDU]
132879
132808
-
Thr
CGT
[ENA]
¡û
>W1810860950
QTTN01000024
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
73696
73770
+
Thr
CGT
[ENA]
¡û
>C151013744
CP006872
Bacillota
Paenibacillus polymyxa SQR-21 SQR21 [CP006872]
564374
564447
+
Thr
CGT
[Ensembl]
¡û
>C151065032
CP010268
Bacillota
Paenibacillus polymyxa Sb3-1 [CP010268]
2105205
2105131
-
Thr
CGT
[Ensembl]
¡û
>C10107237
CP001793
Bacillota
Paenibacillus sp. Y412MC10 [CP001793]
787788
787862
+
Thr
CGT
[Ensembl]
¡û
>C11117668
CP002213
Bacillota
Paenibacillus polymyxa SC2 [CP002213]
610305
610379
+
Thr
CGT
[Ensembl]
¡û
>W1511352045
JRNV01000009
Bacillota
Paenibacillus sp. P1XP2 [JRNV]
36393
36464
+
Thr
CGT
[ENA]
¡û
>W11117672
ADHJ01000010
Bacillota
Paenibacillus vortex V453 [ADHJ]
55256
55329
+
Thr
CGT
[ENA]
¡û
>W11152082
AEXS01000070
Bacillota
Paenibacillus sp. HGF5 [AEXS]
33626
33552
-
Thr
CGT
[ENA]
¡û
>C161022629
CP009909
Bacillota
Paenibacillus polymyxa CF05 [CP009909]
3556788
3556861
+
Thr
CGT
[Ensembl]
¡û
>C161085734
CP015286
Bacillota
Paenibacillus glucanolyticus 5162 [CP015286]
2794574
2794647
+
Thr
CGT
-
¡û
>W121034233
AHKH01000064
Bacillota
Paenibacillus dendritiformis C454 [AHKH]
6506
6432
-
Thr
CGT
[ENA]
¡û
>W1610591009
LDRX01000031
Bacillota
Paenibacillus jamilae [LDRX]
110628
110554
-
Thr
CGT
[ENA]
¡û
>W1610990448
LWMH01000001
Bacillota
Paenibacillus glucanolyticus [LWMH]
2439584
2439657
+
Thr
CGT
[ENA]
¡û
>W1611030302
LZEL01000105
Bacillota
Paenibacillus polymyxa [LZEL]
25075
25149
+
Thr
CGT
[ENA]
¡û
>W1710514857
FNBG01000026
Bacillota
Fontibacillus panacisegetis [FNBG]
45015
45088
+
Thr
CGT
[ENA]
¡û
>W1710529231
FNNV01000004
Bacillota
Paenibacillus sp. CF384 [FNNV]
111125
111199
+
Thr
CGT
[ENA]
¡û
>W1710542978
FNZO01000004
Bacillota
Paenibacillus sp. cl141a [FNZO]
29632
29558
-
Thr
CGT
[ENA]
¡û
>W1710546692
FOCJ01000007
Bacillota
Paenibacillus sp. OV219 [FOCJ]
349644
349718
+
Thr
CGT
[ENA]
¡û
>W1710576645
FPAD01000004
Bacillota
Paenibacillus sp. BC26 [FPAD]
229565
229491
-
Thr
CGT
[ENA]
¡û
>W1710608584
FXAZ01000004
Bacillota
Paenibacillus aquistagni 11 [FXAZ]
225466
225540
+
Thr
CGT
[ENA]
¡û
>W1710617135
JFOM01000037
Bacillota
Paenibacillus sp. LC231 [JFOM]
289721
289647
-
Thr
CGT
[ENA]
¡û
>W1710710289
LDRX01000031
Bacillota
Paenibacillus jamilae [LDRX]
110628
110554
-
Thr
CGT
[ENA]
¡û
>W1710770338
LITP01000001
Bacillota
Bacillus sp. FJAT-18019 [LITP]
1677420
1677349
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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