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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.429924 (20 seq.)
>C171064233
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
1710407
1710480
+
Gly
TCC
-
¡û
>C171064262
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2611324
2611397
+
Gly
TCC
-
¡û
>C171064291
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2953702
2953775
+
Gly
TCC
-
¡û
>C171064329
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
703185
703112
-
Gly
TCC
-
¡û
>C171064351
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
695265
695192
-
Gly
TCC
-
¡û
>WENV182573275
OJFP01000571
[OJFP] seawater metagenome; Sea water
16884
16957
+
Gly
CCC
[ENA]
¢þ
>WENV170688754
LFRM01260538
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4338
4265
-
Gly
CCC
[ENA]
¢þ
>WENV170689459
LFRM01295493
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1896
1823
-
Gly
CCC
[ENA]
¢þ
>WENV170717372
LSQX01033520
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1377
1450
+
Gly
CCC
[ENA]
¢þ
>WENV170723201
LSQX01258810
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11377
11304
-
Gly
CCC
[ENA]
¢þ
>WENV170723545
LSQX01272431
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
144
71
-
Gly
CCC
[ENA]
¢þ
>WENV170723603
LSQX01274963
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1129
1056
-
Gly
CCC
[ENA]
¢þ
>WENV170725452
LSQX01342813
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
549
476
-
Gly
CCC
[ENA]
¢þ
>C151057212
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
501783
501856
+
Gly
TCC
[Ensembl]
¡û
>C151057258
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1597567
1597640
+
Gly
TCC
[Ensembl]
¡û
>W1710506692
FMUS01000039
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
23047
22974
-
Gly
TCC
[ENA]
¡û
>W1710506701
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
1141
1068
-
Gly
TCC
[ENA]
¡û
>W1710520405
FNFP01000001
Bacillota
Natronincola ferrireducens [FNFP]
476886
476959
+
Gly
TCC
[ENA]
¡û
>W1710520432
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
541605
541532
-
Gly
TCC
[ENA]
¡û
>W1710553652
FOHU01000009
Bacillota
Natronincola peptidivorans [FOHU]
144965
144892
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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