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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.43034 (148 seq.)
>W1711580434
MNSZ01000058
Bacillota
Firmicutes bacterium CAG:24053_14 [MNSZ]
53321
53409
+
Ser
TGA
[ENA]
¡û
>WENV180340725
OBLI01040502
[OBLI] pig gut metagenome; faeces
494
406
-
Ser
TGA
[ENA]
¡û
>WENV180526490
OCHI01025021
[OCHI] human gut metagenome; human gut
244
332
+
Ser
TGA
[ENA]
¡û
>WENV180566192
OCLH01122488
[OCLH] human gut metagenome; human gut
169
81
-
Ser
TGA
[ENA]
¡û
>WENV180567490
OCLL01061504
[OCLL] human gut metagenome; human gut
48
136
+
Ser
TGA
[ENA]
¡û
>WENV180632932
OCQZ01032366
[OCQZ] human gut metagenome; human gut
134
222
+
Ser
TGA
[ENA]
¡û
>WENV180747638
ODHN01012343
[ODHN] human metagenome; G_DNA_Stool
1493
1405
-
Ser
TGA
[ENA]
¡û
>WENV180767624
ODIG01000256
[ODIG] human metagenome; G_DNA_Tongue dorsum
38356
38268
-
Ser
TGA
[ENA]
¡û
>WENV180788545
ODIS01074560
[ODIS] human metagenome; G_DNA_Supragingival plaque
134
222
+
Ser
TGA
[ENA]
¡û
>WENV180827877
ODKA01001362
[ODKA] human metagenome; G_DNA_Stool
1480
1568
+
Ser
TGA
[ENA]
¡û
>WENV180847332
ODKT01063990
[ODKT] human metagenome; G_DNA_Supragingival plaque
449
361
-
Ser
TGA
[ENA]
¡û
>WENV180853104
ODKW01029339
[ODKW] human metagenome; G_DNA_Tongue dorsum
527
615
+
Ser
TGA
[ENA]
¡û
>WENV180858277
ODLC01002633
[ODLC] human metagenome; G_DNA_Tongue dorsum
2703
2615
-
Ser
TGA
[ENA]
¡û
>W141084966
AUQY01000003
Bacillota
Peptoniphilus mikwangii ChDC B134 [AUQY]
54640
54552
-
Ser
TGA
[ENA]
¡û
>WENV180884179
ODMC01052506
[ODMC] human metagenome; G_DNA_Tongue dorsum
414
502
+
Ser
TGA
[ENA]
¡û
>WENV180916933
ODTD01002482
[ODTD] human metagenome; G_DNA_Tongue dorsum
2691
2603
-
Ser
TGA
[ENA]
¡û
>WENV180940005
ODTX01172024
[ODTX] human metagenome; G_DNA_Supragingival plaque
138
50
-
Ser
TGA
[ENA]
¡û
>WENV180947884
ODUG01000074
[ODUG] human metagenome; G_DNA_Tongue dorsum
7141
7053
-
Ser
TGA
[ENA]
¡û
>WENV180951655
ODUH01038922
[ODUH] human metagenome; G_DNA_Subgingival plaque
526
614
+
Ser
TGA
[ENA]
¡û
>WENV180953894
ODUJ01000027
[ODUJ] human metagenome; G_DNA_Tongue dorsum
68130
68042
-
Ser
TGA
[ENA]
¡û
>WENV180978163
ODUZ01022479
[ODUZ] human metagenome; G_DNA_Tongue dorsum
477
389
-
Ser
TGA
[ENA]
¡û
>WENV180986029
ODVJ01034839
[ODVJ] human metagenome; G_DNA_Tongue dorsum
352
264
-
Ser
TGA
[ENA]
¡û
>WENV180989750
ODVN01000052
[ODVN] human metagenome; G_DNA_Tongue dorsum
116133
116221
+
Ser
TGA
[ENA]
¡û
>WENV181044433
ODXV01008883
[ODXV] human metagenome; G_DNA_Tongue dorsum
812
724
-
Ser
TGA
[ENA]
¡û
>WENV181059360
ODYM01000777
[ODYM] human metagenome; G_DNA_Tongue dorsum
9480
9392
-
Ser
TGA
[ENA]
¡û
>WENV181074719
OEAO01022348
[OEAO] human metagenome; G_DNA_Tongue dorsum
955
867
-
Ser
TGA
[ENA]
¡û
>WENV181086497
OEAY01000926
[OEAY] human metagenome; G_DNA_Tongue dorsum
14287
14375
+
Ser
TGA
[ENA]
¡û
>WENV181113956
OEEO01000018
[OEEO] human metagenome; G_DNA_Supragingival plaque
115171
115259
+
Ser
TGA
[ENA]
¡û
>WENV181159211
OEIH01097614
[OEIH] human metagenome; G_DNA_Supragingival plaque
153
241
+
Ser
TGA
[ENA]
¡û
>WENV181437140
OGDF01061950
[OGDF] human gut metagenome; human gut
94
6
-
Ser
TGA
[ENA]
¡û
>WENV181474749
OGFD01000463
[OGFD] metagenome; Human gut stool
1338
1250
-
Ser
TGA
[ENA]
¡û
>W08001971
ABEE02000014
Bacillota
Parvimonas micra ATCC 33270 [ABEE]
23202
23117
-
Ser
TGA
[ENA]
¡û
>WENV181682718
OGOU01017007
[OGOU] human gut metagenome; faeces
520
608
+
Ser
TGA
[ENA]
¡û
>WENV181766524
OGQZ01002122
[OGQZ] human gut metagenome; faeces
1292
1380
+
Ser
TGA
[ENA]
¡û
>WENV181865356
OGWU01020832
[OGWU] human gut metagenome; faeces
1275
1363
+
Ser
TGA
[ENA]
¡û
>WENV181874325
OGXA01013887
[OGXA] human gut metagenome; faeces
2347
2259
-
Ser
TGA
[ENA]
¡û
>WENV181902040
OGXW01009621
[OGXW] human gut metagenome; faeces
3310
3222
-
Ser
TGA
[ENA]
¡û
>WENV181904843
OGXX01039128
[OGXX] human gut metagenome; faeces
498
410
-
Ser
TGA
[ENA]
¡û
>WENV181911291
OGYD01000839
[OGYD] human gut metagenome; faeces
1291
1379
+
Ser
TGA
[ENA]
¡û
>WENV181928336
OGYO01000515
[OGYO] human gut metagenome; faeces
6317
6229
-
Ser
TGA
[ENA]
¡û
>WENV181953994
OGZI01084498
[OGZI] human gut metagenome; faeces
249
161
-
Ser
TGA
[ENA]
¡û
>WENV181976046
OHAD01000184
[OHAD] human gut metagenome; faeces
3628
3716
+
Ser
TGA
[ENA]
¡û
>WENV181980422
OHAF01029342
[OHAF] human gut metagenome; faeces
511
423
-
Ser
TGA
[ENA]
¡û
>WENV182005329
OHBE01003577
[OHBE] human gut metagenome; faeces
6073
5985
-
Ser
TGA
[ENA]
¡û
>WENV182018864
OHBX01008801
[OHBX] human gut metagenome; feces
1932
2020
+
Ser
TGA
[ENA]
¡û
>WENV182028867
OHCP01020168
[OHCP] human gut metagenome; feces
756
844
+
Ser
TGA
[ENA]
¡û
>WENV182039028
OHDF01008257
[OHDF] human gut metagenome; feces
1996
1908
-
Ser
TGA
[ENA]
¡û
>WENV182057337
OHEO01003941
[OHEO] human gut metagenome; feces
1056
1144
+
Ser
TGA
[ENA]
¡û
>WENV182087390
OHGW01002440
[OHGW] human gut metagenome; feces
1279
1367
+
Ser
TGA
[ENA]
¡û
>WENV182101551
OHHU01000442
[OHHU] human gut metagenome; feces
1291
1379
+
Ser
TGA
[ENA]
¡û
>WENV182108170
OHIL01007728
[OHIL] human gut metagenome; feces
1878
1790
-
Ser
TGA
[ENA]
¡û
>WENV182125669
OHJS01031487
[OHJS] human gut metagenome; feces
83
171
+
Ser
TGA
[ENA]
¡û
>WENV182154826
OHLP01016715
[OHLP] human gut metagenome; feces
271
183
-
Ser
TGA
[ENA]
¡û
>WENV182165661
OHMO01019341
[OHMO] human gut metagenome; feces
173
261
+
Ser
TGA
[ENA]
¡û
>WENV182172664
OHMY01028572
[OHMY] human gut metagenome; feces
268
356
+
Ser
TGA
[ENA]
¡û
>WENV182192264
OHOZ01002977
[OHOZ] human gut metagenome; feces
5675
5587
-
Ser
TGA
[ENA]
¡û
>WENV182233650
OHRQ01003598
[OHRQ] human gut metagenome; feces
1318
1406
+
Ser
TGA
[ENA]
¡û
>WENV182246786
OHSM01002795
[OHSM] human gut metagenome; feces
3676
3764
+
Ser
TGA
[ENA]
¡û
>WENV182265597
OHTW01006021
[OHTW] human gut metagenome; feces
1313
1401
+
Ser
TGA
[ENA]
¡û
>WENV182392002
OIEG01001045
[OIEG] human gut metagenome; human gut
10212
10300
+
Ser
TGA
[ENA]
¡û
>WENV182398531
OIEN01003120
[OIEN] human gut metagenome; human gut
834
922
+
Ser
TGA
[ENA]
¡û
>WENV182527735
OIWU01000678
[OIWU] human gut metagenome; faeces
32387
32299
-
Ser
TGA
[ENA]
¡û
>WENV182536982
OIXH01002544
[OIXH] human gut metagenome; faeces
5013
5101
+
Ser
TGA
[ENA]
¡û
>WENV182608205
OJJV01000029
[OJJV] metagenome; faeces
25837
25749
-
Ser
TGA
[ENA]
¡û
>WENV182620701
OJKI01014126
[OJKI] metagenome; faeces
575
663
+
Ser
TGA
[ENA]
¡û
>WENV182637281
OJLA01000933
[OJLA] metagenome; faeces
6779
6867
+
Ser
TGA
[ENA]
¡û
>WENV182710741
OJPD01000818
[OJPD] human gut metagenome; stool sample
7167
7079
-
Ser
TGA
[ENA]
¡û
>WENV182728079
OJPW01000937
[OJPW] human gut metagenome; stool sample
12816
12904
+
Ser
TGA
[ENA]
¡û
>WENV182764072
OJRP01001568
[OJRP] human gut metagenome; stool sample
4279
4191
-
Ser
TGA
[ENA]
¡û
>WENV182873164
OKRW01000048
[OKRW] human gut metagenome; faeces
107188
107276
+
Ser
TGA
[ENA]
¡û
>WENV182880141
OKSA01000006
[OKSA] human gut metagenome; faeces
77250
77338
+
Ser
TGA
[ENA]
¡û
>WENV182885144
OKSC01003065
[OKSC] human gut metagenome; faeces
1291
1379
+
Ser
TGA
[ENA]
¡û
>WENV182902356
OKSW01006103
[OKSW] human gut metagenome; feces
950
862
-
Ser
TGA
[ENA]
¡û
>WENV182903896
OKSZ01002634
[OKSZ] human gut metagenome; feces
4069
3981
-
Ser
TGA
[ENA]
¡û
>WENV182913169
OKTN01002008
[OKTN] human gut metagenome; feces
5441
5353
-
Ser
TGA
[ENA]
¡û
>WENV182915278
OKTR01009941
[OKTR] human gut metagenome; feces
930
1018
+
Ser
TGA
[ENA]
¡û
>WENV182945506
OKVK01000217
[OKVK] human gut metagenome; human gut
2516
2428
-
Ser
TGA
[ENA]
¡û
>WENV182969053
OKXB01010017
[OKXB] human gut metagenome; human gut
346
434
+
Ser
TGA
[ENA]
¡û
>WENV183035397
OLFZ01005994
[OLFZ] human gut metagenome; faeces
1293
1381
+
Ser
TGA
[ENA]
¡û
>WENV183037955
OLGB01000027
[OLGB] human gut metagenome; faeces
158083
157995
-
Ser
TGA
[ENA]
¡û
>WENV183042677
OLGD01007184
[OLGD] human gut metagenome; faeces
4775
4863
+
Ser
TGA
[ENA]
¡û
>WENV183043897
OLGE01000132
[OLGE] human gut metagenome; faeces
54433
54521
+
Ser
TGA
[ENA]
¡û
>WENV183077174
OLIW01022195
[OLIW] human gut metagenome; feces
1335
1247
-
Ser
TGA
[ENA]
¡û
>WENV183084296
OLJF01000104
[OLJF] metagenome; faeces
19427
19339
-
Ser
TGA
[ENA]
¡û
>WENV183084398
OLJF01000169
[OLJF] metagenome; faeces
100137
100225
+
Ser
TGA
[ENA]
¡û
>WENV183158243
OLOT01026681
[OLOT] human gut metagenome; faeces
111
199
+
Ser
TGA
[ENA]
¡û
>WENV183160255
OLOV01000021
[OLOV] human gut metagenome; faeces
6515
6603
+
Ser
TGA
[ENA]
¡û
>WENV183161445
OLOV01006915
[OLOV] human gut metagenome; faeces
3417
3329
-
Ser
TGA
[ENA]
¡û
>WENV183166039
OLOX01034128
[OLOX] human gut metagenome; faeces
857
769
-
Ser
TGA
[ENA]
¡û
>WENV183176338
OLPF01005399
[OLPF] human gut metagenome; faeces
1291
1379
+
Ser
TGA
[ENA]
¡û
>WENV183180746
OLPI01001034
[OLPI] human gut metagenome; faeces
24094
24006
-
Ser
TGA
[ENA]
¡û
>WENV183190737
OLPR01001559
[OLPR] human gut metagenome; faeces
1290
1378
+
Ser
TGA
[ENA]
¡û
>WENV183194329
OLPS01063553
[OLPS] human gut metagenome; faeces
321
409
+
Ser
TGA
[ENA]
¡û
>WENV183199090
OLPV01013178
[OLPV] human gut metagenome; faeces
1968
1880
-
Ser
TGA
[ENA]
¡û
>WENV183199878
OLPW01000306
[OLPW] human gut metagenome; faeces
6506
6418
-
Ser
TGA
[ENA]
¡û
>WENV183253130
OLRI01023317
[OLRI] human gut metagenome; faeces
498
586
+
Ser
TGA
[ENA]
¡û
>WENV183262782
OLRQ01007927
[OLRQ] human gut metagenome; faeces
1968
1880
-
Ser
TGA
[ENA]
¡û
>WENV183279342
OLSB01000196
[OLSB] human gut metagenome; faeces
64731
64819
+
Ser
TGA
[ENA]
¡û
>WENV183280180
OLSB01002493
[OLSB] human gut metagenome; faeces
9201
9289
+
Ser
TGA
[ENA]
¡û
>WENV183293388
OLSK01000356
[OLSK] human gut metagenome; faeces
41474
41386
-
Ser
TGA
[ENA]
¡û
>WENV183326339
OLVZ01011061
[OLVZ] human gut metagenome; faeces
3041
2953
-
Ser
TGA
[ENA]
¡û
>WENV183333969
OLWE01027404
[OLWE] human gut metagenome; feces
130
42
-
Ser
TGA
[ENA]
¡û
>WENV183338426
OLWK01000068
[OLWK] human gut metagenome; feces
59524
59612
+
Ser
TGA
[ENA]
¡û
>WENV183339737
OLWL01000291
[OLWL] human gut metagenome; feces
6940
6852
-
Ser
TGA
[ENA]
¡û
>WENV183347067
OLWT01001317
[OLWT] human gut metagenome; feces
1291
1379
+
Ser
TGA
[ENA]
¡û
>WENV183351778
OLWZ01000421
[OLWZ] human gut metagenome; feces
11713
11625
-
Ser
TGA
[ENA]
¡û
>WENV183359573
OLXI01000073
[OLXI] human gut metagenome; feces
9113
9025
-
Ser
TGA
[ENA]
¡û
>WENV183365104
OLXN01001579
[OLXN] human gut metagenome; feces
1291
1379
+
Ser
TGA
[ENA]
¡û
>WENV183382250
OLYL01000096
[OLYL] human gut metagenome; feces
1362
1450
+
Ser
TGA
[ENA]
¡û
>WENV183390803
OLZC01003635
[OLZC] human gut metagenome; feces
2143
2055
-
Ser
TGA
[ENA]
¡û
>WENV183401049
OLZT01000761
[OLZT] human gut metagenome; feces
8914
8826
-
Ser
TGA
[ENA]
¡û
>WENV183409363
OMAG01000143
[OMAG] human gut metagenome; feces
1362
1450
+
Ser
TGA
[ENA]
¡û
>WENV183431789
OMBQ01028022
[OMBQ] human gut metagenome; feces
490
402
-
Ser
TGA
[ENA]
¡û
>WENV183438433
OMCF01000096
[OMCF] human gut metagenome; feces
1362
1450
+
Ser
TGA
[ENA]
¡û
>WENV183457922
OMDM01000102
[OMDM] human gut metagenome; feces
39294
39206
-
Ser
TGA
[ENA]
¡û
>WENV183466299
OMEC01000178
[OMEC] human gut metagenome; feces
35205
35293
+
Ser
TGA
[ENA]
¡û
>WENV183479378
OMFF01016893
[OMFF] human gut metagenome; feces
908
996
+
Ser
TGA
[ENA]
¡û
>WENV183517202
OMNP01000052
[OMNP] human gut metagenome; feces
67016
66928
-
Ser
TGA
[ENA]
¡û
>WENV183576314
OOCI01079334
[OOCI] human gut metagenome; human gut
2
90
+
Ser
TGA
[ENA]
¡û
>WENV183640643
OQVL01007840
[OQVL] human gut metagenome; human gut
5313
5401
+
Ser
TGA
[ENA]
¡û
>WENV183643161
OQVO01002541
[OQVO] human gut metagenome; human gut
10
98
+
Ser
TGA
[ENA]
¡û
>WENV183645872
OQVQ01037836
[OQVQ] human gut metagenome; human gut
716
628
-
Ser
TGA
[ENA]
¡û
>WENV183653192
OQVZ01006974
[OQVZ] human gut metagenome; human gut
2006
1918
-
Ser
TGA
[ENA]
¡û
>WENV183658129
OQWM01000371
[OQWM] human gut metagenome; human gut
3273
3185
-
Ser
TGA
[ENA]
¡û
>WENV183755932
PPYE01116072
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
135
47
-
Ser
TGA
[ENA]
¡û
>WENV170057920
CDZG01056831
[CDZG] gut metagenome; human stools
1272
1360
+
Ser
TGA
[ENA]
¡û
>WENV170090325
CEAF01039750
[CEAF] gut metagenome; human stools
7499
7411
-
Ser
TGA
[ENA]
¡û
>WENV170092918
CEAH01003470
[CEAH] gut metagenome; human stools
132027
132115
+
Ser
TGA
[ENA]
¡û
>WENV170100954
CEAR01012009
[CEAR] gut metagenome; human stools
108915
109003
+
Ser
TGA
[ENA]
¡û
>WENV170108649
CECA01040262
[CECA] gut metagenome; human stools
237534
237622
+
Ser
TGA
[ENA]
¡û
>WENV170110956
CECF01052366
[CECF] gut metagenome; human stools
1328
1416
+
Ser
TGA
[ENA]
¡û
>C191211282
LR134472
Bacillota
Parvimonas micra NCTC11808 [LR134472]
494024
493936
-
Ser
TGA
-
¡û
>W1911498330
OCTQ01000001
Bacillota
Miniphocibacter massiliensis Marseille-P4678 [OCTQ]
497612
497524
-
Ser
TGA
[ENA]
¡û
>C151059061
CP009761
Bacillota
Parvimonas micra KCOM 1535; ChDC B708 [CP009761]
301910
301998
+
Ser
TGA
[Ensembl]
¡û
>W2010082151
BHYQ01000001
Bacillota
Parvimonas micra 13-07-26 [BHYQ]
337044
336956
-
Ser
TGA
[ENA]
¡û
>W2010262548
CABKNC020000005
Bacillota
Parvimonas micra [CABKNC]
23202
23114
-
Ser
TGA
[ENA]
¡û
>W2010337916
CACZLL010000002
Bacillota
Ruminococcaceae bacterium [CACZLL]
99800
99888
+
Ser
TGA
[ENA]
¡û
>W2011159234
OCTQ01000001
Bacillota
Miniphocibacter massiliensis Marseille-P4678 [OCTQ]
497612
497524
-
Ser
TGA
[ENA]
¡û
>W2011449457
RKIS01000001
Bacillota
Parvimonas micra FDAARGOS_569 [RKIS]
1504130
1504042
-
Ser
TGA
[ENA]
¡û
>C211231322
CP066744
Bacillota
Clostridiales bacterium AMB_PP1 [CP066744]
1841721
1841809
+
Ser
TGA
-
¡û
>W10111042
ADCS01000059
Bacillota
Peptoniphilus sp. oral taxon 386 oral taxon 386 str. F0131 [ADCS]
28874
28786
-
Ser
TGA
[ENA]
¡û
>C231436533
CP101408
Bacillota
Parvimonas micra PM79KC-AC-2 [CP101408]
1488715
1488627
-
Ser
TGA
-
¡û
>C231436574
CP101409
Bacillota
Parvimonas micra PM89KC-G-1 [CP101409]
1438449
1438361
-
Ser
TGA
-
¡û
>C231436615
CP101410
Bacillota
Parvimonas micra PM89KC-G-2 [CP101410]
1438249
1438161
-
Ser
TGA
-
¡û
>C231436738
CP101413
Bacillota
Parvimonas micra PM114KC-AC-1 [CP101413]
1284739
1284651
-
Ser
TGA
-
¡û
>W11113768
ADCS01000059
Bacillota
Peptoniphilus sp. oral taxon 386 oral taxon 386 str. F0131 [ADCS]
28874
28786
-
Ser
TGA
[ENA]
¡û
>W11174535
AFUS01000005
Bacillota
Parvimonas sp. oral taxon 393 oral taxon 393 str. F0440 [AFUS]
529145
529057
-
Ser
TGA
[ENA]
¡û
>WENV082393
BAAV01006513
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
918
1008
+
Ser
TGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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