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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.430481 (50 seq.)
>W131045536
AMRN01000007
Alphaproteobacteria
Thalassospira profundimaris WP0211 [AMRN]
105
32
-
Cys
GCA
[ENA]
¡û
>W131045683
AMRQ01000003
Alphaproteobacteria
Thalassospira xiamenensis M-5 = DSM 17429 [AMRQ]
403331
403404
+
Cys
GCA
[ENA]
¡û
>W1710989384
LPVW01000017
Alphaproteobacteria
Thalassospira xiamenensis [LPVW]
109518
109591
+
Cys
GCA
[ENA]
¡û
>W1710989430
LPVX01000029
Alphaproteobacteria
Thalassospira sp. MCCC 1A02491 [LPVX]
301085
301158
+
Cys
GCA
[ENA]
¡û
>W1710991101
LPXK01000013
Alphaproteobacteria
Thalassospira sp. MCCC 1A02898 [LPXK]
298713
298786
+
Cys
GCA
[ENA]
¡û
>W1711078105
LSMN01000220
Alphaproteobacteria
Thalassospira sp. Nap_22 [LSMN]
1093
1166
+
Cys
GCA
[ENA]
¡û
>W131217198
ATWN01000001
Alphaproteobacteria
Thalassospira lucentensis QMT2 = DSM 14000 [ATWN]
755730
755657
-
Cys
GCA
[ENA]
¡û
>W1711302673
MAJC01000002
Alphaproteobacteria
Thalassospira sp. KO164 [MAJC]
3268204
3268131
-
Cys
GCA
[ENA]
¡û
>W1711339741
MCAO01000022
Alphaproteobacteria
Thalassospira sp. MIT1004 [MCAO]
387462
387535
+
Cys
GCA
[ENA]
¡û
>W1712056284
NFZT01000001
Alphaproteobacteria
Pacificimonas flava [NFZT]
2854413
2854340
-
Cys
GCA
[ENA]
¡û
>C009136
CP000157
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [CP000157]
2060468
2060395
-
Cys
GCA
[Ensembl]
¡û
>WENV180365351
OBOB01088918
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
305
378
+
Cys
GCA
[ENA]
¢þ
>WENV182566980
OJEN01000262
[OJEN] seawater metagenome; Sea water
11573
11500
-
Cys
GCA
[ENA]
¢þ
>WENV182568798
OJEX01000009
[OJEX] seawater metagenome; Sea water
687
614
-
Cys
GCA
[ENA]
¢þ
>WENV182577273
OJGD01000183
[OJGD] seawater metagenome; Sea water
10656
10729
+
Cys
GCA
[ENA]
¢þ
>WENV170267267
CERF01038018
[CERF] marine metagenome genome assembly TARA_072_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1278
1351
+
Cys
GCA
[ENA]
¢þ
>WENV170277140
CERP01014993
[CERP] marine metagenome genome assembly TARA_067_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
425
498
+
Cys
GCA
[ENA]
¢þ
>WENV170520662
CEWE01549647
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
119
46
-
Cys
GCA
[ENA]
¢þ
>WENV170576291
FRDC01000339
[FRDC] freshwater metagenome; water
20098
20171
+
Cys
GCA
[ENA]
¢þ
>WENV170576449
FRDC01000615
[FRDC] freshwater metagenome; water
8198
8125
-
Cys
GCA
[ENA]
¢þ
>WENV170892781
MDTD01042708
[MDTD] marine metagenome; seawater
2839
2912
+
Cys
GCA
[ENA]
¢þ
>C181097328
CP024199
Alphaproteobacteria
Thalassospira marina CSC3H3 [CP024199]
1987775
1987702
-
Cys
GCA
-
¡û
>C181202105
CP031555
Alphaproteobacteria
Thalassospira indica PB8BT [CP031555]
2522132
2522059
-
Cys
GCA
-
¡û
>W09101649
AAGG01000003
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [AAGG]
184807
184880
+
Cys
GCA
[ENA]
¡û
>W1910574254
JPWA01000012
Alphaproteobacteria
Thalassospira xianhensis MCCC 1A02616 [JPWA]
133122
133195
+
Cys
GCA
[ENA]
¡û
>W1910574318
JPWB01000007
Alphaproteobacteria
Thalassospira profundimaris R8-17 [JPWB]
265335
265408
+
Cys
GCA
[ENA]
¡û
>W1910574356
JPWC01000005
Alphaproteobacteria
Thalassospira profundimaris R4-5 [JPWC]
76
3
-
Cys
GCA
[ENA]
¡û
>W1910574390
JPWD01000002
Alphaproteobacteria
Thalassospira xiamenensis W3-1 [JPWD]
792649
792722
+
Cys
GCA
[ENA]
¡û
>W1910574547
JPWH01000018
Alphaproteobacteria
Thalassospira profundimaris S25.3.2 [JPWH]
108
35
-
Cys
GCA
[ENA]
¡û
>W1910574601
JPWI01000016
Alphaproteobacteria
Thalassospira profundimaris PR54-5 [JPWI]
109866
109939
+
Cys
GCA
[ENA]
¡û
>W1911410102
NWTK01000005
Alphaproteobacteria
Thalassospira marina CSC1P2 [NWTK]
107131
107204
+
Cys
GCA
[ENA]
¡û
>W1911424857
NXGX01000002
Alphaproteobacteria
Thalassospira lohafexi 139Z-12 [NXGX]
218295
218222
-
Cys
GCA
[ENA]
¡û
>W1911494918
OBMM01000001
Alphaproteobacteria
Thalassospira xiamenensis USBA 78 [OBMM]
433447
433520
+
Cys
GCA
[ENA]
¡û
>W1810889027
QURJ01000001
Alphaproteobacteria
Altererythrobacter insulae BPTF-M16 [QURJ]
1694719
1694646
-
Cys
GCA
[ENA]
¡û
>C151006613
CP004388
Alphaproteobacteria
Thalassospira xiamenensis M-5 = DSM 17429 [CP004388]
2017835
2017762
-
Cys
GCA
[Ensembl]
¡û
>C151096893
CP012669
Alphaproteobacteria
Altererythrobacter epoxidivorans CGMCC 1.7731 [CP012669]
316473
316546
+
Cys
GCA
-
¡û
>W1510030955
CCDX020000005
Alphaproteobacteria
Thalassospira sp. GB04J01 [CCDX]
678
605
-
Cys
GCA
[ENA]
¡û
>W1511528543
JYII01000012
Alphaproteobacteria
Thalassospira sp. HJ [JYII]
843980
843907
-
Cys
GCA
[ENA]
¡û
>W1610527051
JPVZ01000005
Alphaproteobacteria
Thalassospira tepidiphila MCCC 1A03514 [JPVZ]
105
32
-
Cys
GCA
[ENA]
¡û
>W1610527083
JPWE01000005
Alphaproteobacteria
Thalassospira profundimaris [JPWE]
301126
301199
+
Cys
GCA
[ENA]
¡û
>W1610844260
LPVW01000017
Alphaproteobacteria
Thalassospira xiamenensis [LPVW]
109518
109591
+
Cys
GCA
[ENA]
¡û
>W1610844306
LPVX01000029
Alphaproteobacteria
Thalassospira sp. MCCC 1A02491 [LPVX]
301085
301158
+
Cys
GCA
[ENA]
¡û
>W1610845773
LPXK01000013
Alphaproteobacteria
Thalassospira sp. MCCC 1A02898 [LPXK]
298713
298786
+
Cys
GCA
[ENA]
¡û
>W1611052998
MAJC01000002
Alphaproteobacteria
Thalassospira sp. KO164 [MAJC]
3268204
3268131
-
Cys
GCA
[ENA]
¡û
>W1710599175
FTON01000003
Alphaproteobacteria
Thalassospira xiamenensis M-5 = DSM 17429 [FTON]
414806
414879
+
Cys
GCA
[ENA]
¡û
>W1710613459
JAMA01000002
Alphaproteobacteria
Thalassospira sp. MCCC 1A02803 [JAMA]
615082
615009
-
Cys
GCA
[ENA]
¡û
>W1710616664
JFKB01000024
Alphaproteobacteria
Thalassospira alkalitolerans [JFKB]
56066
56139
+
Cys
GCA
[ENA]
¡û
>W1710628606
JPVZ01000005
Alphaproteobacteria
Thalassospira tepidiphila MCCC 1A03514 [JPVZ]
105
32
-
Cys
GCA
[ENA]
¡û
>W1710628638
JPWE01000005
Alphaproteobacteria
Thalassospira profundimaris [JPWE]
301126
301199
+
Cys
GCA
[ENA]
¡û
>W1710636864
JRJD01000001
Alphaproteobacteria
Thalassospira sp. TSL5-1 [JRJD]
1598999
1598926
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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