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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.430720 (33 seq.)
>WENV180951754
ODUH01051107
[ODUH] human metagenome; G_DNA_Subgingival plaque
343
269
-
Glu
TTC
[ENA]
¢þ
>W141220204
AZXQ01000004
Bacillota
Cohnella panacarvi Gsoil 349 [AZXQ]
1164464
1164390
-
Glu
TTC
[ENA]
¡û
>W141220235
AZXQ01000010
Bacillota
Cohnella panacarvi Gsoil 349 [AZXQ]
487
561
+
Glu
TTC
[ENA]
¡û
>W141220246
AZXQ01000010
Bacillota
Cohnella panacarvi Gsoil 349 [AZXQ]
328743
328817
+
Glu
TTC
[ENA]
¡û
>WENV183711506
PDWI01071597
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
545
619
+
Glu
TTC
[ENA]
¢þ
>WENV183716203
PDWI01293595
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
725
799
+
Glu
TTC
[ENA]
¢þ
>WENV183718686
PDWJ01005889
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
112
186
+
Glu
TTC
[ENA]
¢þ
>WENV183719321
PDWJ01012328
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5669
5595
-
Glu
TTC
[ENA]
¢þ
>WENV183726597
PJTO01000029
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
270212
270138
-
Glu
TTC
[ENA]
¢þ
>WENV183726652
PJTO01000050
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
77584
77658
+
Glu
TTC
[ENA]
¢þ
>WENV183726796
PJTO01000186
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
61198
61124
-
Glu
TTC
[ENA]
¢þ
>WENV183737107
PJUD01000495
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
19194
19120
-
Glu
TTC
[ENA]
¢þ
>WENV183737140
PJUD01000568
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
3349
3275
-
Glu
TTC
[ENA]
¢þ
>WENV183738143
PJUD01091517
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
225
299
+
Glu
TTC
[ENA]
¢þ
>C191007663
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
1559226
1559300
+
Glu
TTC
-
¡û
>C191007672
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
6102878
6102804
-
Glu
TTC
-
¡û
>C191007687
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
5173941
5173867
-
Glu
TTC
-
¡û
>C191007702
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
5160950
5160876
-
Glu
TTC
-
¡û
>W1910827148
MWSG01000006
Bacillota
Cohnella sp. CIP 111063 [MWSG]
332896
332822
-
Glu
TTC
[ENA]
¡û
>W1910827165
MWSG01000017
Bacillota
Cohnella sp. CIP 111063 [MWSG]
157467
157393
-
Glu
TTC
[ENA]
¡û
>W1910827170
MWSG01000022
Bacillota
Cohnella sp. CIP 111063 [MWSG]
157407
157333
-
Glu
TTC
[ENA]
¡û
>W1910930819
NISV01000001
Bacillota
Neobacillus soli DSM 15604 [NISV]
123403
123477
+
Glu
TTC
[ENA]
¡û
>W1810367671
PVYW01000006
Bacillota
Cohnella sp. SGD-V74 [PVYW]
332896
332822
-
Glu
TTC
[ENA]
¡û
>W1810367688
PVYW01000017
Bacillota
Cohnella sp. SGD-V74 [PVYW]
157467
157393
-
Glu
TTC
[ENA]
¡û
>W1810367693
PVYW01000022
Bacillota
Cohnella sp. SGD-V74 [PVYW]
157407
157333
-
Glu
TTC
[ENA]
¡û
>W1810787738
QRDY01000011
Bacillota
Cohnella lupini CECT 8236 [QRDY]
175730
175656
-
Glu
TTC
[ENA]
¡û
>W1810787762
QRDY01000025
Bacillota
Cohnella lupini CECT 8236 [QRDY]
442
516
+
Glu
TTC
[ENA]
¡û
>W1810787778
QRDY01000038
Bacillota
Cohnella lupini CECT 8236 [QRDY]
22357
22431
+
Glu
TTC
[ENA]
¡û
>W1810787791
QRDZ01000005
Bacillota
Cohnella phaseoli CECT 7287 [QRDZ]
255222
255296
+
Glu
TTC
[ENA]
¡û
>W1810787798
QRDZ01000014
Bacillota
Cohnella phaseoli CECT 7287 [QRDZ]
249
323
+
Glu
TTC
[ENA]
¡û
>W1810787820
QRDZ01000030
Bacillota
Cohnella phaseoli CECT 7287 [QRDZ]
336
410
+
Glu
TTC
[ENA]
¡û
>C11108987
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
1140641
1140567
-
Glu
TTC
[Ensembl]
¡û
>C11109004
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
760748
760674
-
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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