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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.431614 (14 seq.)
>WENV170257605
CEQX01353736
[CEQX] marine metagenome genome assembly TARA_070_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
803
730
-
Cys
GCA
[ENA]
¢þ
>C181054080
CP021781
Gammaproteobacteria
Francisella adeliensis FDC440 [CP021781]
1624942
1624869
-
Cys
GCA
-
¡û
>C181059150
CP022132
Gammaproteobacteria
Francisella halioticida DSM 23729 [CP022132]
1201634
1201561
-
Cys
GCA
-
¡û
>C181060825
CP022207
Gammaproteobacteria
Francisella noatunensis [CP022207]
1396573
1396500
-
Cys
GCA
-
¡û
>W1911687801
QLIS01000004
Gammaproteobacteria
Pseudofrancisella aestuarii SYSU WZ-2 [QLIS]
41230
41303
+
Cys
GCA
[ENA]
¡û
>C151050974
CP009436
Gammaproteobacteria
Francisella philomiragia O#319-067 [CP009436]
2034012
2033939
-
Cys
GCA
[Ensembl]
¡û
>C151051087
CP009440
Gammaproteobacteria
Francisella philomiragia GA01-2794 [CP009440]
1572172
1572099
-
Cys
GCA
[Ensembl]
¡û
>C151051127
CP009442
Gammaproteobacteria
Francisella philomiragia O#319-036 [FSC 153] [CP009442]
878185
878112
-
Cys
GCA
[Ensembl]
¡û
>C151054386
CP009574
Gammaproteobacteria
Francisella sp. FSC1006 [CP009574]
1782793
1782866
+
Cys
GCA
[Ensembl]
¡û
>C151063479
CP010019
Gammaproteobacteria
Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L [CP010019]
667074
667001
-
Cys
GCA
[Ensembl]
¡û
>C151087460
CP011923
Gammaproteobacteria
Francisella orientalis FNO190 [CP011923]
1366610
1366537
-
Cys
GCA
[Ensembl]
¡û
>C151091896
CP012153
Gammaproteobacteria
Francisella orientalis FNO01 [CP012153]
1366791
1366718
-
Cys
GCA
-
¡û
>C11109284
CP002872
Gammaproteobacteria
Francisella salina TX07-7308 [CP002872]
975585
975658
+
Cys
GCA
[Ensembl]
¡û
>WENV069065
AACY023751077
Marine microbial communities from Global Ocean Sampling (GOS)
940
1013
+
Cys
GCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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