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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.432288 (69 seq.)
>W1710888778
LMZZ01000015
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
55094
55021
-
Cys
GCA
[ENA]
¡û
>W1710888783
LMZZ01000022
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
272920
272993
+
Cys
GCA
[ENA]
¡û
>W131099158
AOSU01000057
Gammaproteobacteria
Glaesserella parasuis gx033 [AOSU]
13092
13165
+
Cys
GCA
[ENA]
¡û
>W131170452
ARFN01000036
Gammaproteobacteria
Actinobacillus capsulatus DSM 19761 [ARFN]
97251
97324
+
Cys
GCA
[ENA]
¡û
>W1711571551
MNAL01000001
Gammaproteobacteria
Glaesserella parasuis [MNAL]
250189
250262
+
Cys
GCA
[ENA]
¡û
>W1711571815
MNAP01000067
Gammaproteobacteria
Glaesserella parasuis [MNAP]
5101
5028
-
Cys
GCA
[ENA]
¡û
>W1711571907
MNAR01000069
Gammaproteobacteria
Glaesserella parasuis [MNAR]
1570
1643
+
Cys
GCA
[ENA]
¡û
>W1711571971
MNAT01000004
Gammaproteobacteria
Glaesserella parasuis [MNAT]
76015
76088
+
Cys
GCA
[ENA]
¡û
>W1711572104
MNAW01000001
Gammaproteobacteria
Glaesserella parasuis [MNAW]
102639
102712
+
Cys
GCA
[ENA]
¡û
>W1711572202
MNAY01000001
Gammaproteobacteria
Glaesserella parasuis [MNAY]
168846
168773
-
Cys
GCA
[ENA]
¡û
>W1711603318
MOLW01000085
Gammaproteobacteria
Glaesserella parasuis [MOLW]
18170
18097
-
Cys
GCA
[ENA]
¡û
>W1711712341
MTBW01000010
Gammaproteobacteria
Actinobacillus suis [MTBW]
52906
52979
+
Cys
GCA
[ENA]
¡û
>W1711712428
MTBX01000072
Gammaproteobacteria
Actinobacillus suis [MTBX]
11800
11727
-
Cys
GCA
[ENA]
¡û
>C171104122
CP020085
Gammaproteobacteria
Glaesserella parasuis CL120103 [CP020085]
1684261
1684188
-
Cys
GCA
-
¡û
>C010488
AE017143
Gammaproteobacteria
[Haemophilus] ducreyi 35000HP [AE017143]
1340333
1340260
-
Cys
GCA
[Ensembl]
¡û
>W141051668
ANKT01000026
Gammaproteobacteria
Glaesserella parasuis str. Nagasaki [ANKT]
1942
2015
+
Cys
GCA
[ENA]
¡û
>W141062976
APBU01000017
Gammaproteobacteria
Glaesserella parasuis SW114 [APBU]
157716
157643
-
Cys
GCA
[ENA]
¡û
>W141063036
APBV01000071
Gammaproteobacteria
Glaesserella parasuis MN-H [APBV]
94072
93999
-
Cys
GCA
[ENA]
¡û
>W141063045
APBW01000018
Gammaproteobacteria
Glaesserella parasuis 12939 [APBW]
5497
5424
-
Cys
GCA
[ENA]
¡û
>W141063121
APBY01000011
Gammaproteobacteria
Glaesserella parasuis H465 [APBY]
19835
19908
+
Cys
GCA
[ENA]
¡û
>W08007803
ABKM01000054
Gammaproteobacteria
Glaesserella parasuis 29755 [ABKM]
9653
9726
+
Cys
GCA
[ENA]
¡û
>WENV181158053
OEIG01105476
[OEIG] human metagenome; G_DNA_Hard palate
212
139
-
Cys
GCA
[ENA]
¢þ
>WENV181589627
OGKL01016969
[OGKL] metagenome; Human gut stool
58
131
+
Cys
GCA
[ENA]
¢þ
>W141400981
JDSN01000052
Gammaproteobacteria
Glaesserella parasuis HPS9 [JDSN]
8312
8385
+
Cys
GCA
[ENA]
¡û
>C181099530
CP024412
Gammaproteobacteria
Glaesserella parasuis SH0104 [CP024412]
874538
874611
+
Cys
GCA
-
¡û
>C181171486
CP029003
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 1 str. 4074 [CP029003]
894535
894462
-
Cys
GCA
-
¡û
>C181192317
CP030753
Gammaproteobacteria
Actinobacillus pleuropneumoniae S4074 [CP030753]
894542
894469
-
Cys
GCA
-
¡û
>C181225298
LT906456
Gammaproteobacteria
Actinobacillus suis NCTC12996 [LT906456]
628979
629052
+
Cys
GCA
-
¡û
>C191205707
LR134310
Gammaproteobacteria
Actinobacillus equuli NCTC8529 [LR134310]
2242898
2242971
+
Cys
GCA
-
¡û
>C191208993
LR134364
Gammaproteobacteria
[Haemophilus] ducreyi NCTC11483 [LR134364]
1027125
1027198
+
Cys
GCA
-
¡û
>C191212105
LR134486
Gammaproteobacteria
Actinobacillus equuli NCTC9435 [LR134486]
595344
595417
+
Cys
GCA
-
¡û
>W141621469
JJNR01000204
Gammaproteobacteria
Glaesserella parasuis ST4-2 [JJNR]
7314
7387
+
Cys
GCA
[ENA]
¡û
>W1810578453
QEPS01000001
Gammaproteobacteria
Haemophilus parahaemolyticus C2006000788 [QEPS]
482733
482806
+
Cys
GCA
[ENA]
¡û
>C151044965
CP009159
Gammaproteobacteria
Actinobacillus suis ATCC 33415 [CP009159]
629007
629080
+
Cys
GCA
[Ensembl]
¡û
>W1510064446
CDBC01000001
Gammaproteobacteria
Haemophilus parahaemolyticus G321 [CDBC]
78017
78090
+
Cys
GCA
[ENA]
¡û
>W10116671
ADOE01000017
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. S1536 [ADOE]
45232
45159
-
Cys
GCA
[ENA]
¡û
>W10116894
ADOK01000014
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 11 str. 56153 [ADOK]
24145
24072
-
Cys
GCA
[ENA]
¡û
>W10120618
ADXN01000006
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. 4226 [ADXN]
51627
51700
+
Cys
GCA
[ENA]
¡û
>W1511318470
JPXY01000012
Gammaproteobacteria
Gallibacterium genomosp. 2 2 CCM5976 [JPXY]
81
8
-
Cys
GCA
[ENA]
¡û
>W1511387919
JSVG01000013
Gammaproteobacteria
Actinobacillus pleuropneumoniae 460 [JSVG]
141798
141725
-
Cys
GCA
[ENA]
¡û
>W1511388239
JSVY01000011
Gammaproteobacteria
Actinobacillus pleuropneumoniae 5651 [JSVY]
141797
141724
-
Cys
GCA
[ENA]
¡û
>W1511388287
JSVZ01000011
Gammaproteobacteria
Actinobacillus pleuropneumoniae 518 [JSVZ]
66540
66467
-
Cys
GCA
[ENA]
¡û
>W11121482
ADOD01000014
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 1 str. 4074 [ADOD]
69723
69650
-
Cys
GCA
[ENA]
¡û
>W11121524
ADOE01000017
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. S1536 [ADOE]
45232
45159
-
Cys
GCA
[ENA]
¡û
>W11121747
ADOK01000014
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 11 str. 56153 [ADOK]
24145
24072
-
Cys
GCA
[ENA]
¡û
>W11127362
ADXN01000006
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 2 str. 4226 [ADXN]
51627
51700
+
Cys
GCA
[ENA]
¡û
>C161032393
CP011222
Gammaproteobacteria
[Haemophilus] ducreyi 82-029362 [CP011222]
1299861
1299788
-
Cys
GCA
-
¡û
>C161032439
CP011223
Gammaproteobacteria
[Haemophilus] ducreyi 6644 [CP011223]
1317769
1317696
-
Cys
GCA
-
¡û
>C161032492
CP011224
Gammaproteobacteria
[Haemophilus] ducreyi HD183 [CP011224]
1296732
1296659
-
Cys
GCA
-
¡û
>C161032591
CP011226
Gammaproteobacteria
[Haemophilus] ducreyi HMC56 [CP011226]
1246666
1246593
-
Cys
GCA
-
¡û
>C161032641
CP011227
Gammaproteobacteria
[Haemophilus] ducreyi NZV1 [CP011227]
1218425
1218352
-
Cys
GCA
-
¡û
>C161032689
CP011228
Gammaproteobacteria
[Haemophilus] ducreyi 33921 [CP011228]
1211547
1211474
-
Cys
GCA
-
¡û
>C161032793
CP011230
Gammaproteobacteria
[Haemophilus] ducreyi DMC64 [CP011230]
1220397
1220324
-
Cys
GCA
-
¡û
>C161032844
CP011231
Gammaproteobacteria
[Haemophilus] ducreyi DMC111 [CP011231]
1195759
1195686
-
Cys
GCA
-
¡û
>C161087810
CP015424
Gammaproteobacteria
[Haemophilus] ducreyi VAN1 [CP015424]
374540
374613
+
Cys
GCA
-
¡û
>C161087918
CP015426
Gammaproteobacteria
[Haemophilus] ducreyi VAN3 [CP015426]
878749
878822
+
Cys
GCA
-
¡û
>C161088046
CP015428
Gammaproteobacteria
[Haemophilus] ducreyi VAN5 [CP015428]
316357
316284
-
Cys
GCA
-
¡û
>C161088054
CP015429
Gammaproteobacteria
[Haemophilus] ducreyi GHA1 [CP015429]
367108
367181
+
Cys
GCA
-
¡û
>C161088142
CP015430
Gammaproteobacteria
[Haemophilus] ducreyi GHA2 [CP015430]
368997
368924
-
Cys
GCA
-
¡û
>C161088158
CP015431
Gammaproteobacteria
[Haemophilus] ducreyi GHA3 [CP015431]
711666
711739
+
Cys
GCA
-
¡û
>C161088226
CP015432
Gammaproteobacteria
[Haemophilus] ducreyi GHA5 [CP015432]
1123410
1123337
-
Cys
GCA
-
¡û
>W121066971
AJSX01000034
Gammaproteobacteria
Pasteurella bettyae CCUG 2042 [AJSX]
10677
10604
-
Cys
GCA
[ENA]
¡û
>C131008779
CP003875
Gammaproteobacteria
Actinobacillus suis H91-0380 [CP003875]
670634
670707
+
Cys
GCA
[Ensembl]
¡û
>W1610545087
JTJM01000026
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJM]
32345
32272
-
Cys
GCA
[ENA]
¡û
>W1610545335
JTJR01000026
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJR]
201992
202065
+
Cys
GCA
[ENA]
¡û
>W1610749156
LMZZ01000015
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
55094
55021
-
Cys
GCA
[ENA]
¡û
>W1610749161
LMZZ01000022
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
272920
272993
+
Cys
GCA
[ENA]
¡û
>W1710648218
JTJM01000026
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJM]
32345
32272
-
Cys
GCA
[ENA]
¡û
>W1710648466
JTJR01000026
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJR]
201992
202065
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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