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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.432565 (110 seq.)
>W131164600
ARAX01000005
Actinomycetota
Sciscionella marina DSM 45152 [ARAX]
123409
123336
-
Gly
TCC
[ENA]
¡û
>W131170487
ARFO01000011
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
70595
70522
-
Gly
TCC
[ENA]
¡û
>W131217154
ATWM01000003
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
143808
143881
+
Gly
TCC
[ENA]
¡û
>W131231003
AUIC01000004
Actinomycetota
Pseudoclavibacter soli DSM 23366 [AUIC]
164080
164151
+
Gly
TCC
[ENA]
¡û
>W1711491956
MKJZ01000037
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
182437
182510
+
Gly
TCC
[ENA]
¡û
>W1711492221
MKKF01000015
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
11823
11896
+
Gly
TCC
[ENA]
¡û
>W1711503069
MKTH01000006
Actinomycetota
Cellulomonas sp. 73-92 [MKTH]
108680
108753
+
Gly
TCC
[ENA]
¡û
>WENV180226966
OBBT01000086
[OBBT] human gut metagenome; Infant 2 DOL 16 gut
39344
39271
-
Gly
TCC
[ENA]
¢þ
>WENV180230015
OBCK01000464
[OBCK] human gut metagenome; human gut
1539
1468
-
Gly
TCC
[ENA]
¢þ
>WENV180241276
OBDG01000009
[OBDG] human gut metagenome; human gut
81659
81730
+
Gly
TCC
[ENA]
¢þ
>WENV180344184
OBLK01263776
[OBLK] soil metagenome; Clay
292
365
+
Gly
TCC
[ENA]
¢þ
>WENV180493664
OBZZ01000153
[OBZZ] human gut metagenome; faeces
10591
10519
-
Gly
TCC
[ENA]
¢þ
>WENV180571349
OCLT01000055
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
178372
178299
-
Gly
TCC
[ENA]
¢þ
>WENV180696749
ODCV01000143
[ODCV] human metagenome; G_DNA_Anterior nares
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180698800
ODDJ01000143
[ODDJ] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180700288
ODDP01000143
[ODDP] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180700474
ODDS01000143
[ODDS] human metagenome; G_DNA_Posterior fornix
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180706739
ODEU01000143
[ODEU] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180706925
ODEX01000143
[ODEX] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180707049
ODEZ01000143
[ODEZ] human metagenome; G_DNA_Posterior fornix
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180707173
ODFB01000143
[ODFB] human metagenome; G_DNA_Tongue dorsum
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180707359
ODFE01000143
[ODFE] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180707421
ODFF01000143
[ODFF] human metagenome; G_DNA_Buccal mucosa
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180887178
ODMG01000143
[ODMG] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180887681
ODMJ01000143
[ODMJ] human metagenome; G_DNA_Buccal mucosa
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180895126
ODMV01000143
[ODMV] human metagenome; G_DNA_Anterior nares
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180895746
ODNF01000143
[ODNF] human metagenome; G_DNA_Buccal mucosa
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180895808
ODNG01000143
[ODNG] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180898382
ODNP01000143
[ODNP] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180898444
ODNQ01000143
[ODNQ] human metagenome; G_DNA_Palatine Tonsils
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180899250
ODOD01000143
[ODOD] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180903189
ODOS01000143
[ODOS] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180906817
ODPT01000143
[ODPT] human metagenome; G_DNA_Buccal mucosa
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180909584
ODQN01000143
[ODQN] human metagenome; G_DNA_Tongue dorsum
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180909646
ODQO01000143
[ODQO] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180909770
ODQQ01000143
[ODQQ] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180910452
ODRB01000143
[ODRB] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180911320
ODRP01000143
[ODRP] human metagenome; G_DNA_Posterior fornix
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180911568
ODRT01000143
[ODRT] human metagenome; G_DNA_Buccal mucosa
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180911630
ODRU01000143
[ODRU] human metagenome; G_DNA_Anterior nares
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180911754
ODRW01000143
[ODRW] human metagenome; G_DNA_Buccal mucosa
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180911940
ODRZ01000143
[ODRZ] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180912064
ODSB01000143
[ODSB] human metagenome; G_DNA_Posterior fornix
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180912312
ODSF01000143
[ODSF] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180940209
ODTY01000315
[ODTY] human metagenome; G_DNA_Anterior nares
1463
1390
-
Gly
TCC
[ENA]
¢þ
>WENV180943927
ODUC01004412
[ODUC] human metagenome; G_DNA_Supragingival plaque
5970
6043
+
Gly
TCC
[ENA]
¢þ
>WENV180944270
ODUC01011962
[ODUC] human metagenome; G_DNA_Supragingival plaque
2454
2525
+
Gly
TCC
[ENA]
¢þ
>WENV180944987
ODUC01055388
[ODUC] human metagenome; G_DNA_Supragingival plaque
28
101
+
Gly
TCC
[ENA]
¢þ
>WENV180972568
ODUV01014659
[ODUV] human metagenome; G_DNA_Anterior nares
152
79
-
Gly
TCC
[ENA]
¢þ
>WENV181006872
ODWC01000005
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
179766
179693
-
Gly
TCC
[ENA]
¢þ
>WENV181020027
ODWU01038220
[ODWU] human metagenome; G_DNA_Supragingival plaque
780
707
-
Gly
TCC
[ENA]
¢þ
>WENV181025037
ODWY01000189
[ODWY] human metagenome; G_DNA_Anterior nares
5885
5958
+
Gly
TCC
[ENA]
¢þ
>WENV181042210
ODXT01000003
[ODXT] human metagenome; G_DNA_R_Retroauricular crease
60407
60480
+
Gly
TCC
[ENA]
¢þ
>WENV181070628
OEAE01004528
[OEAE] human metagenome; G_DNA_Supragingival plaque
994
921
-
Gly
TCC
[ENA]
¢þ
>WENV181078815
OEAS01000621
[OEAS] human metagenome; G_DNA_Supragingival plaque
3310
3237
-
Gly
TCC
[ENA]
¢þ
>WENV181078860
OEAS01000813
[OEAS] human metagenome; G_DNA_Supragingival plaque
10340
10267
-
Gly
TCC
[ENA]
¢þ
>WENV181115916
OEET01000143
[OEET] human metagenome; G_DNA_Buccal mucosa
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV181116632
OEFE01000143
[OEFE] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV181121772
OEFL01018377
[OEFL] human metagenome; G_DNA_Supragingival plaque
801
874
+
Gly
TCC
[ENA]
¢þ
>WENV181123323
OEFP01000011
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
186355
186282
-
Gly
TCC
[ENA]
¢þ
>WENV181137697
OEGJ01015391
[OEGJ] human metagenome; G_DNA_Supragingival plaque
625
698
+
Gly
TCC
[ENA]
¢þ
>WENV181177261
OEJS01000296
[OEJS] human metagenome; G_DNA_Supragingival plaque
951
878
-
Gly
TCC
[ENA]
¢þ
>WENV181206093
OFAS01006174
[OFAS] metagenome; hydrothermal vent
148
221
+
Gly
TCC
[ENA]
¢þ
>WENV181328479
OFLU01000020
[OFLU] metagenome; faeces
121934
121863
-
Gly
TCC
[ENA]
¢þ
>WENV181328821
OFLV01000025
[OFLV] metagenome; faeces
11319
11390
+
Gly
TCC
[ENA]
¢þ
>W141155867
AXMH01000003
Actinomycetota
Propionibacterium sp. KPL2000 [AXMH]
1021679
1021608
-
Gly
TCC
[ENA]
¡û
>W141155903
AXMI01000003
Actinomycetota
Propionibacterium sp. KPL1854 [AXMI]
192138
192065
-
Gly
TCC
[ENA]
¡û
>WENV182629658
OJKU01000009
[OJKU] metagenome; surface
4006
4079
+
Gly
TCC
[ENA]
¢þ
>WENV182640527
OJLC01000005
[OJLC] metagenome; surface
37029
37102
+
Gly
TCC
[ENA]
¢þ
>WENV182641468
OJLH01000023
[OJLH] metagenome; surface
17953
17880
-
Gly
TCC
[ENA]
¢þ
>WENV182644334
OJLW01024246
[OJLW] metagenome; surface
68
141
+
Gly
TCC
[ENA]
¢þ
>WENV182797310
OJSX01000004
[OJSX] human gut metagenome; human gut
186332
186259
-
Gly
TCC
[ENA]
¢þ
>WENV182807420
OJVW01001191
[OJVW] human gut metagenome; human gut
1372
1445
+
Gly
TCC
[ENA]
¢þ
>WENV182815416
OJYR01000029
[OJYR] human gut metagenome; human gut
51598
51669
+
Gly
TCC
[ENA]
¢þ
>WENV182828775
OKDJ01000301
[OKDJ] human gut metagenome; human gut
416
489
+
Gly
TCC
[ENA]
¢þ
>WENV182837346
OKGF01002241
[OKGF] human gut metagenome; human gut
1323
1394
+
Gly
TCC
[ENA]
¢þ
>WENV182841395
OKHV01000029
[OKHV] human gut metagenome; human gut
43493
43564
+
Gly
TCC
[ENA]
¢þ
>W141284053
JALM01000033
Actinomycetota
Sciscionella sp. SE31 [JALM]
15408
15335
-
Gly
TCC
[ENA]
¡û
>WENV183723925
PEHZ01006460
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
193
266
+
Gly
TCC
[ENA]
¢þ
>WENV183723932
PEHZ01008675
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
2447
2520
+
Gly
TCC
[ENA]
¢þ
>WENV183723968
PEHZ01010555
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
215
142
-
Gly
TCC
[ENA]
¢þ
>WENV183723976
PEHZ01012742
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
229
302
+
Gly
TCC
[ENA]
¢þ
>WENV183724002
PEHZ01015500
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
1928
2001
+
Gly
TCC
[ENA]
¢þ
>WENV183724017
PEHZ01017370
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
215
142
-
Gly
TCC
[ENA]
¢þ
>WENV183724062
PEHZ01027295
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
739
666
-
Gly
TCC
[ENA]
¢þ
>WENV170575159
FLYN01038195
[FLYN] hot springs metagenome; Sediment
345
272
-
Gly
TCC
[ENA]
¢þ
>WENV170727588
LULE01000585
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
5954
6027
+
Gly
TCC
[ENA]
¢þ
>C191150931
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
1004578
1004505
-
Gly
TCC
-
¡û
>C191158399
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
914781
914708
-
Gly
TCC
-
¡û
>C191159484
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
365211
365138
-
Gly
TCC
-
¡û
>C191183692
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
805223
805150
-
Gly
TCC
-
¡û
>W09103284
AAJB01000097
Actinomycetota
Nocardioides sp. JS614 [AAJB]
2127
2054
-
Gly
TCC
[ENA]
¡û
>W1910812015
MVCH01000006
Actinomycetota
Cutibacterium acnes subsp. defendens 10-43 [MVCH]
23554
23627
+
Gly
TCC
[ENA]
¡û
>W1910812086
MVCI01000004
Actinomycetota
Cutibacterium acnes subsp. defendens 09-109 [MVCI]
180125
180052
-
Gly
TCC
[ENA]
¡û
>W1910852769
NBIQ01000004
Actinomycetota
Cutibacterium avidum CI828 [NBIQ]
52074
52145
+
Gly
TCC
[ENA]
¡û
>W1911137829
NOWL01000005
Actinomycetota
Cutibacterium acnes P15-159 [NOWL]
191064
190991
-
Gly
TCC
[ENA]
¡û
>W1911533131
OKQN01000010
Actinomycetota
Janibacter massiliensis Marseille-P4121 [OKQN]
139083
139156
+
Gly
TCC
[ENA]
¡û
>W1911709308
QPKK01000092
Actinomycetota
Desertihabitans aurantiacus CPCC 204711 [QPKK]
6139
6066
-
Gly
TCC
[ENA]
¡û
>W1911817402
QZMN01000002
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
21241
21312
+
Gly
TCC
[ENA]
¡û
>W1810744407
QOUI01000017
Actinomycetota
Desertihabitans brevis 16Sb5-5 [QOUI]
12152
12224
+
Gly
TCC
[ENA]
¡û
>W10121994
ADYR01000006
Actinomycetota
Cutibacterium acnes HL002PA3 [ADYR]
60382
60455
+
Gly
TCC
[ENA]
¡û
>W10123344
ADZV01000023
Actinomycetota
Cutibacterium acnes HL001PA1 [ADZV]
69622
69549
-
Gly
TCC
[ENA]
¡û
>C11116478
CP002409
Actinomycetota
Cutibacterium acnes 266 [CP002409]
1688453
1688380
-
Gly
TCC
[Ensembl]
¡û
>W11128738
ADYR01000006
Actinomycetota
Cutibacterium acnes HL002PA3 [ADYR]
60382
60455
+
Gly
TCC
[ENA]
¡û
>W11130088
ADZV01000023
Actinomycetota
Cutibacterium acnes HL001PA1 [ADZV]
69622
69549
-
Gly
TCC
[ENA]
¡û
>W1511472671
JVZP01000092
Actinomycetota
Cutibacterium acnes 119_PAVI [JVZP]
186296
186223
-
Gly
TCC
[ENA]
¡û
>W11177031
AFYF01000080
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
32664
32737
+
Gly
TCC
[ENA]
¡û
>C121007988
CP003196
Actinomycetota
Cutibacterium acnes TypeIA2 P.acn17 [CP003196]
1687550
1687477
-
Gly
TCC
[Ensembl]
¡û
>W1610069631
BCSQ01000035
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
7465
7392
-
Gly
TCC
[ENA]
¡û
>W1710067004
BCSQ01000035
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
7465
7392
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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