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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.432790 (26 seq.)
>W1711581262
MNTW01000006
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
97041
96967
-
Cys
GCA
[ENA]
¡û
>C171129799
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
1189574
1189648
+
Cys
GCA
-
¡û
>C171129801
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
1189764
1189838
+
Cys
GCA
-
¡û
>W131221721
AUAR01000011
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
72530
72604
+
Cys
GCA
[ENA]
¡û
>W131221734
AUAR01000015
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
27637
27711
+
Cys
GCA
[ENA]
¡û
>WENV180243824
OBDJ01143004
[OBDJ] human gut metagenome; human gut
160
86
-
Cys
GCA
[ENA]
¢þ
>WENV180326608
OBKS01115704
[OBKS] human gut metagenome; human gut
407
481
+
Cys
GCA
[ENA]
¢þ
>WENV180851374
ODKV01061673
[ODKV] human metagenome; G_DNA_Stool
594
668
+
Cys
GCA
[ENA]
¢þ
>WENV181641013
OGNF01001051
[OGNF] metagenome; Human gut stool
163
89
-
Cys
GCA
[ENA]
¢þ
>WENV183075289
OLIV01036374
[OLIV] human gut metagenome; stool sample
604
678
+
Cys
GCA
[ENA]
¢þ
>WENV183258298
OLRN01002243
[OLRN] human gut metagenome; faeces
127
53
-
Cys
GCA
[ENA]
¢þ
>WENV183540368
OOAJ01015952
[OOAJ] human gut metagenome; human gut
160
86
-
Cys
GCA
[ENA]
¢þ
>WENV183570918
OOCD01021277
[OOCD] human gut metagenome; human gut
119
45
-
Cys
GCA
[ENA]
¢þ
>WENV183573844
OOCH01001029
[OOCH] human gut metagenome; human gut
23526
23600
+
Cys
GCA
[ENA]
¢þ
>WENV183573846
OOCH01001029
[OOCH] human gut metagenome; human gut
23716
23790
+
Cys
GCA
[ENA]
¢þ
>WENV183597952
OODF01016311
[OODF] human gut metagenome; human gut
1026
1100
+
Cys
GCA
[ENA]
¢þ
>WENV183747569
PPCM01005619
[PPCM] marine sediment metagenome; marine sediment
2454
2528
+
Cys
GCA
[ENA]
¢þ
>WENV170657655
JTFP01007023
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1364
1290
-
Cys
GCA
[ENA]
¢þ
>WENV170657663
JTFP01007545
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
808
882
+
Cys
GCA
[ENA]
¢þ
>C191000282
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
268685
268611
-
Cys
GCA
-
¡û
>W09108817
ABTP01000004
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
319911
319837
-
Cys
GCA
[ENA]
¡û
>W09117987
ACCN01000003
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
98690
98764
+
Cys
GCA
[ENA]
¡û
>C09104254
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2862390
2862316
-
Cys
GCA
[Ensembl]
¡û
>C10104995
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
279800
279726
-
Cys
GCA
[Ensembl]
¡û
>C161069038
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
2520782
2520708
-
Cys
GCA
[Ensembl]
¡û
>C161069043
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
2317129
2317055
-
Cys
GCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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