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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.432941 (31 seq.)
>W131146346
AQHR01000112
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
76811
76882
+
Cys
GCA
[ENA]
¡û
>W131235003
AULF01000015
Bacteroidota
Pedobacter glucosidilyticus DSM 23534 [AULF]
869
798
-
Cys
GCA
[ENA]
¡û
>W1711751692
MUNY01000066
Bacteroidota
Algoriphagus sp. A40 [MUNY]
39819
39746
-
Cys
GCA
[ENA]
¡û
>w023332
AAXU01000004
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
368973
368900
-
Cys
GCA
[ENA]
¡û
>WENV181169984
OEIV010018498
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
136
207
+
Cys
GCA
[ENA]
¢þ
>WENV183736764
PJUD01000017
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
42570
42499
-
Cys
GCA
[ENA]
¢þ
>WENV183737865
PJUD01041796
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
157
228
+
Cys
GCA
[ENA]
¢þ
>WENV183738557
PJUE01000020
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
42570
42499
-
Cys
GCA
[ENA]
¢þ
>WENV183740131
PJUF01000425
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
19692
19763
+
Cys
GCA
[ENA]
¢þ
>WENV183742458
PJUI01000001
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
808174
808245
+
Cys
GCA
[ENA]
¢þ
>WENV170653645
JRYJ01023832
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
5290
5217
-
Cys
GCA
[ENA]
¢þ
>WENV170653899
JRYK01000247
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
9577
9650
+
Cys
GCA
[ENA]
¢þ
>C191175207
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
2346608
2346535
-
Cys
GCA
-
¡û
>C191189182
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
2472718
2472645
-
Cys
GCA
-
¡û
>W1910548310
FZOK01000012
Bacteroidota
Belliella buryatensis 5C [FZOK]
124829
124900
+
Cys
GCA
[ENA]
¡û
>W1810365011
PVTR01000009
Bacteroidota
Mongoliibacter ruber DSM 27929 [PVTR]
84433
84506
+
Cys
GCA
[ENA]
¡û
>W1810606289
QGOL01000014
Bacteroidota
Algoriphagus litoralis DSL-12 [QGOL]
152390
152461
+
Cys
GCA
[ENA]
¡û
>W1810704217
QMHN01000001
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
364035
363964
-
Cys
GCA
[ENA]
¡û
>W1810704271
QMHO01000005
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
159272
159345
+
Cys
GCA
[ENA]
¡û
>W1810704366
QMHQ01000006
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
105666
105737
+
Cys
GCA
[ENA]
¡û
>W1810705061
QMIK01000005
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
353057
353128
+
Cys
GCA
[ENA]
¡û
>SRA1051950
SRR035098.112197
454 Sequencing (SRP001819)
46
119
+
Cys
GCA
[SRA]
>SRA1052205
SRR035098.159958
454 Sequencing (SRP001819)
47
120
+
Cys
GCA
[SRA]
>C11105736
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
2658477
2658404
-
Cys
GCA
[Ensembl]
¡û
>W1511206117
JMTN01000013
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
19669
19598
-
Cys
GCA
[ENA]
¡û
>C11117910
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
1609596
1609667
+
Cys
GCA
[Ensembl]
¡û
>W11140063
AEKX01000006
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
272858
272787
-
Cys
GCA
[ENA]
¡û
>C121010197
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
4105212
4105285
+
Cys
GCA
[Ensembl]
¡û
>W1710542618
FNZH01000002
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
914818
914745
-
Cys
GCA
[ENA]
¡û
>W1710593056
FRCY01000002
Bacteroidota
Cyclobacterium lianum [FRCY]
256396
256469
+
Cys
GCA
[ENA]
¡û
>W1710599291
FTOP01000010
Bacteroidota
Belliella pelovolcani [FTOP]
60692
60765
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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