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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.434296 (8 seq.)
>C001223
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
5292286
5292215
-
Gln
TTG
[Ensembl]
¡û
>C015304
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
1891951
1891880
-
Gln
TTG
[Ensembl]
¡û
>WENV183702479
PDVI01000260
[PDVI] alkali sediment metagenome; glacial lake sediment
1240
1167
-
Gln
TTG
[ENA]
¢þ
>C181078403
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
757690
757763
+
Gln
TTG
-
¡û
>W09101154
AAEA01000007
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
132580
132507
-
Gln
TTG
[ENA]
¡û
>C161002511
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
5076523
5076596
+
Gln
TTG
[Ensembl]
¡û
>C161038928
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
1891695
1891621
-
Gln
TTG
[Ensembl]
¡û
>W1610656811
LJOR01000055
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
87975
87902
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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