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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.435870 (65 seq.)
>W1710797308
LJSY01000016
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
70219
70146
-
Cys
GCA
[ENA]
¡û
>W1710991301
LPXO01000035
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
1134
1061
-
Cys
GCA
[ENA]
¡û
>W1711126431
LUOO01000122
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
30159
30232
+
Cys
GCA
[ENA]
¡û
>W131231314
AUIJ01000010
Alphaproteobacteria
Sediminimonas qiaohouensis DSM 21189 [AUIJ]
129162
129235
+
Cys
GCA
[ENA]
¡û
>W1711456300
MJAP01000033
Alphaproteobacteria
Natronohydrobacter thiooxidans [MJAP]
33360
33287
-
Cys
GCA
[ENA]
¡û
>W1711695335
MSIT01000026
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
138
65
-
Cys
GCA
[ENA]
¡û
>W141020455
AJKJ01000001
Alphaproteobacteria
Citreicella sp. 357 [AJKJ]
4161
4088
-
Cys
GCA
[ENA]
¡û
>WENV180396076
OBPU01027797
[OBPU] marine metagenome; ENVO:00002010
87
160
+
Cys
GCA
[ENA]
¢þ
>W141064386
APVH01000009
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
172114
172041
-
Cys
GCA
[ENA]
¡û
>W141065746
AQQW01000004
Alphaproteobacteria
Roseivivax marinus 22II-s10s [AQQW]
404
331
-
Cys
GCA
[ENA]
¡û
>WENV182542912
OJAZ01007266
[OJAZ] seawater metagenome; Sea water
1815
1888
+
Cys
GCA
[ENA]
¢þ
>WENV182560828
OJDV01000026
[OJDV] seawater metagenome; Sea water
43338
43265
-
Cys
GCA
[ENA]
¢þ
>WENV182591959
OJIO01025199
[OJIO] seawater metagenome; Sea water
327
400
+
Cys
GCA
[ENA]
¢þ
>W141284801
JAME01000003
Alphaproteobacteria
Roseivivax isoporae LMG 25204 [JAME]
194076
194149
+
Cys
GCA
[ENA]
¡û
>W141290139
JASC01000014
Alphaproteobacteria
Sulfitobacter noctilucae NB-68 [JASC]
290404
290331
-
Cys
GCA
[ENA]
¡û
>W141290173
JASD01000008
Alphaproteobacteria
Sulfitobacter noctilucicola NB-77 [JASD]
2033368
2033295
-
Cys
GCA
[ENA]
¡û
>WENV183062536
OLID01033583
[OLID] seawater metagenome; Sea water
567
494
-
Cys
GCA
[ENA]
¢þ
>WENV183717567
PDWJ01001131
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
425
352
-
Cys
GCA
[ENA]
¢þ
>WENV170024227
BCQL01031276
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
694
767
+
Cys
GCA
[ENA]
¢þ
>ENV08002231
ABPP01002810
microbial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
637
564
-
Cys
GCA
[ENA]
¡û
>WENV170358080
CETK01051360
[CETK] marine metagenome genome assembly TARA_111_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
794
721
-
Cys
GCA
[ENA]
¢þ
>W141426698
JEMU01000011
Alphaproteobacteria
Sulfitobacter mediterraneus [JEMU]
143955
144028
+
Cys
GCA
[ENA]
¡û
>WENV170518057
CEWE01085089
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
500
427
-
Cys
GCA
[ENA]
¢þ
>WENV170682434
LFIK01000116
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
19343
19270
-
Cys
GCA
[ENA]
¢þ
>WENV170682602
LFIK01000488
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
26672
26745
+
Cys
GCA
[ENA]
¢þ
>WENV170739231
LULQ01000011
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
30159
30232
+
Cys
GCA
[ENA]
¢þ
>WENV170782404
MAAC01009746
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
706864
706791
-
Cys
GCA
[ENA]
¢þ
>WENV170957838
MKWU01000216
[MKWU] sponge metagenome;
72395
72322
-
Cys
GCA
[ENA]
¢þ
>C181060566
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
1740881
1740954
+
Cys
GCA
-
¡û
>C181068125
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
2694954
2694881
-
Cys
GCA
-
¡û
>C181152299
CP027407
Alphaproteobacteria
Roseobacter denitrificans FDAARGOS_309 [CP027407]
3932100
3932027
-
Cys
GCA
-
¡û
>C191018041
CP020694
Alphaproteobacteria
Sulfitobacter sp. D7 [CP020694]
2631902
2631975
+
Cys
GCA
-
¡û
>C191127877
CP034588
Alphaproteobacteria
Silicimonas algicola KC90 [CP034588]
1111343
1111270
-
Cys
GCA
-
¡û
>C191141156
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
1419774
1419701
-
Cys
GCA
-
¡û
>W141562482
JHZF01000013
Alphaproteobacteria
Pseudooceanicola nanhaiensis DSM 18065 [JHZF]
1155582
1155509
-
Cys
GCA
[ENA]
¡û
>W141820554
JQMY01000001
Alphaproteobacteria
Oceanicola sp. MCTG156(1a) [JQMY]
3028368
3028441
+
Cys
GCA
[ENA]
¡û
>W1910442653
FWFK01000001
Alphaproteobacteria
Roseivivax jejudonensis CECT 8625 [FWFK]
124475
124548
+
Cys
GCA
[ENA]
¡û
>W1910443332
FWFZ01000008
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
44480
44553
+
Cys
GCA
[ENA]
¡û
>W1910499695
FXYD01000002
Alphaproteobacteria
Octadecabacter ascidiaceicola CECT 8868 [FXYD]
224939
224866
-
Cys
GCA
[ENA]
¡û
>W1910499872
FXYH01000007
Alphaproteobacteria
Pelagimonas varians CECT 8663 [FXYH]
194563
194636
+
Cys
GCA
[ENA]
¡û
>W1910548474
FZON01000089
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
6604
6531
-
Cys
GCA
[ENA]
¡û
>W1911239548
NSDV01000010
Alphaproteobacteria
Paracoccaceae bacterium La 6 [NSDV]
1346229
1346302
+
Cys
GCA
[ENA]
¡û
>W1911539770
ONZF01000003
Alphaproteobacteria
Palleronia abyssalis CECT 8504 [ONZF]
137756
137829
+
Cys
GCA
[ENA]
¡û
>W1911582605
PHNT01000001
Alphaproteobacteria
Roseovarius salinarum N53 [PHNT]
134350
134423
+
Cys
GCA
[ENA]
¡û
>W1911653458
QDFI01000009
Alphaproteobacteria
Phycocomes zhengii LMIT002 [QDFI]
24474
24547
+
Cys
GCA
[ENA]
¡û
>W1810061246
PDNI01000010
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
11701
11774
+
Cys
GCA
[ENA]
¡û
>W1810504325
QBKU01000011
Alphaproteobacteria
Sulfitobacter mediterraneus DSM 12244 [QBKU]
161862
161935
+
Cys
GCA
[ENA]
¡û
>W1810584281
QFAR01000001
Alphaproteobacteria
Pelagicola sp. LXJ1103 [QFAR]
2839568
2839641
+
Cys
GCA
[ENA]
¡û
>W1810594710
QGDJ01000004
Alphaproteobacteria
Jannaschia seohaensis DSM 25227 [QGDJ]
128625
128552
-
Cys
GCA
[ENA]
¡û
>W1810676749
QKMF01000003
Alphaproteobacteria
Pelagimonas varians DSM 23678 [QKMF]
34534
34461
-
Cys
GCA
[ENA]
¡û
>W1810685676
QKZL01000008
Alphaproteobacteria
Palleronia aestuarii DSM 22009 [QKZL]
67409
67482
+
Cys
GCA
[ENA]
¡û
>W1810761126
QPLJ01000036
Alphaproteobacteria
Jannaschia formosa 12N15 [QPLJ]
2796
2869
+
Cys
GCA
[ENA]
¡û
>W1610661265
LJSY01000016
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
70219
70146
-
Cys
GCA
[ENA]
¡û
>W1610845973
LPXO01000035
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
1134
1061
-
Cys
GCA
[ENA]
¡û
>W1610937364
LUOO01000122
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
30159
30232
+
Cys
GCA
[ENA]
¡û
>WENV078314
AAFZ01024952
Fossil microbial community from Whale Fall (Santa Cruz Basin)
408
481
+
Cys
GCA
[ENA]
>W1710562810
FOPF01000003
Alphaproteobacteria
Palleronia marisminoris [FOPF]
85739
85812
+
Cys
GCA
[ENA]
¡û
>W1710562850
FOPG01000001
Alphaproteobacteria
Sulfitobacter dubius [FOPG]
1412255
1412328
+
Cys
GCA
[ENA]
¡û
>W1710572896
FOXA01000005
Alphaproteobacteria
Tranquillimonas alkanivorans [FOXA]
20027
19954
-
Cys
GCA
[ENA]
¡û
>W1710574847
FOYO01000001
Alphaproteobacteria
Litoreibacter janthinus [FOYO]
3265892
3265965
+
Cys
GCA
[ENA]
¡û
>W1710576224
FOZW01000003
Alphaproteobacteria
Alloyangia pacifica [FOZW]
160967
160894
-
Cys
GCA
[ENA]
¡û
>W1710576932
FPAJ01000002
Alphaproteobacteria
Sulfitobacter marinus [FPAJ]
241875
241948
+
Cys
GCA
[ENA]
¡û
>W1710587501
FQYO01000002
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
532555
532482
-
Cys
GCA
[ENA]
¡û
>W1710591146
FRBN01000003
Alphaproteobacteria
Roseovarius marisflavi [FRBN]
38290
38363
+
Cys
GCA
[ENA]
¡û
>W1710606893
FWYD01000006
Alphaproteobacteria
Primorskyibacter flagellatus [FWYD]
9177
9104
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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