This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.435985 (50 seq.)
>W1710923817
LOCK01000042
Bacillota
Desulfitobacterium hafniense [LOCK]
1070
997
-
Gly
TCC
[ENA]
¡û
>W1711076527
LSLJ01000005
Bacillota
Sporomusa sphaeroides DSM 2875 [LSLJ]
56076
56149
+
Gly
TCC
[ENA]
¡û
>W1711076544
LSLJ01000010
Bacillota
Sporomusa sphaeroides DSM 2875 [LSLJ]
13739
13812
+
Gly
TCC
[ENA]
¡û
>W131162703
AQZD01000005
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
352614
352687
+
Gly
TCC
[ENA]
¡û
>W131162739
AQZD01000013
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
2499
2426
-
Gly
TCC
[ENA]
¡û
>W1711510598
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
6333
6406
+
Gly
TCC
[ENA]
¡û
>W1711926290
NADJ01000038
Bacillota
Desulfosporosinus sp. FKB [NADJ]
121351
121278
-
Gly
TCC
[ENA]
¡û
>W1711932772
NAHZ01000033
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
184378
184451
+
Gly
TCC
[ENA]
¡û
>C007801
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1724078
1724151
+
Gly
TCC
[Ensembl]
¡û
>C007821
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
2317493
2317420
-
Gly
TCC
[Ensembl]
¡û
>WENV180315069
OBKH01010451
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
468
395
-
Gly
TCC
[ENA]
¢þ
>WENV181430419
OGCZ01002338
[OGCZ] metagenome; Human gut stool
132
205
+
Gly
TCC
[ENA]
¢þ
>WENV181752739
OGQQ01013960
[OGQQ] human gut metagenome; faeces
1959
1886
-
Gly
TCC
[ENA]
¢þ
>C08005403
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
2286042
2286115
+
Gly
TCC
[Ensembl]
¡û
>WENV183581066
OOCN01001924
[OOCN] human gut metagenome; human gut
10993
11066
+
Gly
TCC
[ENA]
¢þ
>W1910638995
LSLK01000071
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
2745
2818
+
Gly
TCC
[ENA]
¡û
>W1910639006
LSLK01000073
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
66209
66136
-
Gly
TCC
[ENA]
¡û
>W1510586059
CTRP01000002
Bacillota
Sporomusa ovata An4 [CTRP]
159592
159519
-
Gly
TCC
[ENA]
¡û
>W1510586080
CTRP01000010
Bacillota
Sporomusa ovata An4 [CTRP]
14302
14375
+
Gly
TCC
[ENA]
¡û
>W1510755292
CYSP01000012
Bacillota
Propionispora sp. 2/2-37 Iso2/2 [CYSP]
143250
143177
-
Gly
TCC
[ENA]
¡û
>W1510755316
CYSP01000023
Bacillota
Propionispora sp. 2/2-37 Iso2/2 [CYSP]
46647
46720
+
Gly
TCC
[ENA]
¡û
>W1511187122
JMGA01000029
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
19427
19354
-
Gly
TCC
[ENA]
¡û
>W1511187155
JMGA01000078
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
22730
22803
+
Gly
TCC
[ENA]
¡û
>W1511187167
JMGA01000080
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
1384
1457
+
Gly
TCC
[ENA]
¡û
>W1511645997
LDZY01000001
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
70115
70042
-
Gly
TCC
[ENA]
¡û
>C121005939
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
108909
108982
+
Gly
TCC
[Ensembl]
¡û
>C121005972
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
4214533
4214460
-
Gly
TCC
[Ensembl]
¡û
>C121005989
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
2917188
2917115
-
Gly
TCC
[Ensembl]
¡û
>C121007630
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
2599897
2599824
-
Gly
TCC
[Ensembl]
¡û
>C121011472
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2639313
2639240
-
Gly
TCC
[Ensembl]
¡û
>C121014779
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
102901
102974
+
Gly
TCC
[Ensembl]
¡û
>C121014816
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3718613
3718540
-
Gly
TCC
[Ensembl]
¡û
>C121014829
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3014310
3014237
-
Gly
TCC
[Ensembl]
¡û
>C121014891
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
2952311
2952238
-
Gly
TCC
[Ensembl]
¡û
>C123000246
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
104236
104309
+
Gly
TCC
[Ensembl]
¡û
>W123000322
AGJG01000050
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
4012
4085
+
Gly
TCC
[ENA]
¡û
>W1610781418
LOCK01000042
Bacillota
Desulfitobacterium hafniense [LOCK]
1070
997
-
Gly
TCC
[ENA]
¡û
>W1730038157
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
6933
7006
+
Gly
TCC
[ENA]
¡û
>W1730038285
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
858
785
-
Gly
TCC
[ENA]
¡û
>W1710513835
FNAM01000009
Bacillota
Sporomusa acidovorans [FNAM]
140225
140152
-
Gly
TCC
[ENA]
¡û
>W1710513837
FNAM01000015
Bacillota
Sporomusa acidovorans [FNAM]
57654
57727
+
Gly
TCC
[ENA]
¡û
>W1710513863
FNAM01000028
Bacillota
Sporomusa acidovorans [FNAM]
59858
59931
+
Gly
TCC
[ENA]
¡û
>W1710548618
FODY01000002
Bacillota
Propionispora vibrioides [FODY]
216916
216843
-
Gly
TCC
[ENA]
¡û
>W1710548680
FODY01000048
Bacillota
Propionispora vibrioides [FODY]
6159
6086
-
Gly
TCC
[ENA]
¡û
>W1710568603
FOTS01000064
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
24762
24689
-
Gly
TCC
[ENA]
¡û
>W1710588168
FQZD01000017
Bacillota
Propionispora hippei DSM 15287 [FQZD]
41595
41668
+
Gly
TCC
[ENA]
¡û
>W1710588205
FQZD01000050
Bacillota
Propionispora hippei DSM 15287 [FQZD]
21347
21274
-
Gly
TCC
[ENA]
¡û
>W1710593531
FRDN01000015
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
183615
183688
+
Gly
TCC
[ENA]
¡û
>W1710593554
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
80404
80331
-
Gly
TCC
[ENA]
¡û
>W1710593560
FRDN01000033
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
15
88
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK