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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.436593 (33 seq.)
>WENV180118459
OASD01000003
[OASD] human gut metagenome; ENVO:feces
190798
190724
-
Gly
GCC
[ENA]
¢þ
>WENV180118541
OASD01000045
[OASD] human gut metagenome; ENVO:feces
84358
84284
-
Gly
GCC
[ENA]
¢þ
>WENV180403327
OBRT01000001
[OBRT] human gut metagenome; ENVO:feces
164414
164340
-
Gly
GCC
[ENA]
¢þ
>WENV180403417
OBRT01000145
[OBRT] human gut metagenome; ENVO:feces
15990
15916
-
Gly
GCC
[ENA]
¢þ
>WENV180405351
OBTM01002171
[OBTM] human gut metagenome; ENVO:feces
2767
2841
+
Gly
GCC
[ENA]
¢þ
>WENV180726236
ODGS01069995
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
1
75
+
Gly
GCC
[ENA]
¢þ
>WENV180751732
ODHS01132636
[ODHS] human metagenome; G_DNA_Supragingival plaque
117
191
+
Gly
GCC
[ENA]
¢þ
>WENV180762710
ODHZ01274201
[ODHZ] human metagenome; G_DNA_Stool
62
136
+
Gly
GCC
[ENA]
¢þ
>WENV180769765
ODIG01153735
[ODIG] human metagenome; G_DNA_Tongue dorsum
270
344
+
Gly
GCC
[ENA]
¢þ
>WENV180786117
ODIR01084568
[ODIR] human metagenome; G_DNA_Stool
222
296
+
Gly
GCC
[ENA]
¢þ
>WENV180847647
ODKT01127763
[ODKT] human metagenome; G_DNA_Supragingival plaque
216
290
+
Gly
GCC
[ENA]
¢þ
>WENV180882748
ODMC01000465
[ODMC] human metagenome; G_DNA_Tongue dorsum
6502
6428
-
Gly
GCC
[ENA]
¢þ
>WENV180882940
ODMC01001013
[ODMC] human metagenome; G_DNA_Tongue dorsum
13454
13380
-
Gly
GCC
[ENA]
¢þ
>WENV180930804
ODTP01000416
[ODTP] human metagenome; G_DNA_Tongue dorsum
26879
26953
+
Gly
GCC
[ENA]
¢þ
>WENV180985970
ODVJ01029414
[ODVJ] human metagenome; G_DNA_Tongue dorsum
1006
932
-
Gly
GCC
[ENA]
¢þ
>WENV181009799
ODWE01219386
[ODWE] human metagenome; G_DNA_Supragingival plaque
117
191
+
Gly
GCC
[ENA]
¢þ
>WENV181011840
ODWI01170114
[ODWI] human metagenome; G_DNA_Tongue dorsum
84
10
-
Gly
GCC
[ENA]
¢þ
>WENV181040615
ODXS01000334
[ODXS] human metagenome; G_DNA_Tongue dorsum
23588
23662
+
Gly
GCC
[ENA]
¢þ
>WENV181049842
ODYD01002618
[ODYD] human metagenome; G_DNA_Supragingival plaque
2009
1935
-
Gly
GCC
[ENA]
¢þ
>WENV181050321
ODYD01013143
[ODYD] human metagenome; G_DNA_Supragingival plaque
462
388
-
Gly
GCC
[ENA]
¢þ
>WENV181077628
OEAP01094200
[OEAP] human metagenome; G_DNA_Supragingival plaque
1
75
+
Gly
GCC
[ENA]
¢þ
>WENV181081853
OEAS01434533
[OEAS] human metagenome; G_DNA_Supragingival plaque
148
222
+
Gly
GCC
[ENA]
¢þ
>WENV181087648
OEAY01100742
[OEAY] human metagenome; G_DNA_Tongue dorsum
211
137
-
Gly
GCC
[ENA]
¢þ
>WENV181094180
OEBY01000011
[OEBY] human metagenome; G_DNA_Tongue dorsum
101444
101370
-
Gly
GCC
[ENA]
¢þ
>WENV181094551
OEBY01000304
[OEBY] human metagenome; G_DNA_Tongue dorsum
13429
13355
-
Gly
GCC
[ENA]
¢þ
>WENV181103414
OECT01128355
[OECT] human metagenome; G_DNA_Tongue dorsum
35
109
+
Gly
GCC
[ENA]
¢þ
>C08003174
CP000776
Campylobacterota
Campylobacter hominis ATCC BAA-381 [CP000776]
858123
858197
+
Gly
GCC
[Ensembl]
¡û
>C08003178
CP000776
Campylobacterota
Campylobacter hominis ATCC BAA-381 [CP000776]
1573119
1573193
+
Gly
GCC
[Ensembl]
¡û
>WENV183706329
PDWI01003770
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2336
2262
-
Gly
GCC
[ENA]
¢þ
>C181038893
CP019683
Campylobacterota
Campylobacter sputorum bv. faecalis CCUG 20703 [CP019683]
1649334
1649408
+
Gly
GCC
-
¡û
>C181038938
CP019684
Campylobacterota
Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 [CP019684]
1615775
1615849
+
Gly
GCC
-
¡û
>C181038982
CP019685
Campylobacterota
Campylobacter sputorum RM8705 [CP019685]
1570399
1570473
+
Gly
GCC
-
¡û
>W1511205879
JMTI01000035
Campylobacterota
Campylobacter sputorum biovar sputorum INTA08/209 [JMTI]
40206
40132
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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