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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4379 (50 seq.)
>W1711308783
MAQF01000030
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQF]
18573
18479
-
SeC(p)
TCA
[ENA]
¡û
>WENV180226068
OBBP01038587
[OBBP] human oral metagenome; human oral
142
236
+
SeC
TCA
[ENA]
¢þ
>W141021655
AJMG01000056
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype c str. AAS4A [AJMG]
79684
79778
+
SeC(p)
TCA
[ENA]
¡û
>WENV180759527
ODHY01028006
[ODHY] human metagenome; G_DNA_Buccal mucosa
523
429
-
SeC
TCA
[ENA]
¢þ
>WENV180781410
ODIP01000003
[ODIP] human metagenome; G_DNA_Supragingival plaque
26015
25921
-
SeC
TCA
[ENA]
¢þ
>WENV180823002
ODJW01001771
[ODJW] human metagenome; G_DNA_Supragingival plaque
1800
1706
-
SeC
TCA
[ENA]
¢þ
>WENV180832103
ODKC01000505
[ODKC] human metagenome; G_DNA_Supragingival plaque
18254
18160
-
SeC
TCA
[ENA]
¢þ
>WENV180832307
ODKC01001075
[ODKC] human metagenome; G_DNA_Supragingival plaque
4891
4797
-
SeC
TCA
[ENA]
¢þ
>WENV180832483
ODKC01001871
[ODKC] human metagenome; G_DNA_Supragingival plaque
6929
7023
+
SeC
TCA
[ENA]
¢þ
>WENV180835846
ODKE01015837
[ODKE] human metagenome; G_DNA_Supragingival plaque
155
249
+
SeC
TCA
[ENA]
¢þ
>WENV180843182
ODKN01000807
[ODKN] human metagenome; G_DNA_Supragingival plaque
3765
3671
-
SeC
TCA
[ENA]
¢þ
>WENV180861848
ODLE01014460
[ODLE] human metagenome; G_DNA_Tongue dorsum
692
598
-
SeC
TCA
[ENA]
¢þ
>WENV180880679
ODLZ01045428
[ODLZ] human metagenome; G_DNA_Tongue dorsum
504
410
-
SeC
TCA
[ENA]
¢þ
>WENV180889293
ODMN01026446
[ODMN] human metagenome; G_DNA_Supragingival plaque
97
191
+
SeC
TCA
[ENA]
¢þ
>WENV180981115
ODVE01007250
[ODVE] human metagenome; G_DNA_Supragingival plaque
322
416
+
SeC
TCA
[ENA]
¢þ
>WENV181001982
ODVW01081540
[ODVW] human metagenome; G_DNA_Buccal mucosa
191
97
-
SeC
TCA
[ENA]
¢þ
>WENV181008551
ODWE01007380
[ODWE] human metagenome; G_DNA_Supragingival plaque
2823
2917
+
SeC
TCA
[ENA]
¢þ
>WENV181008820
ODWE01014906
[ODWE] human metagenome; G_DNA_Supragingival plaque
2371
2465
+
SeC
TCA
[ENA]
¢þ
>WENV181008902
ODWE01018751
[ODWE] human metagenome; G_DNA_Supragingival plaque
95
1
-
SeC
TCA
[ENA]
¢þ
>WENV181050158
ODYD01007521
[ODYD] human metagenome; G_DNA_Supragingival plaque
95
1
-
SeC
TCA
[ENA]
¢þ
>WENV181060385
ODYM01158873
[ODYM] human metagenome; G_DNA_Tongue dorsum
121
28
-
SeC
TCA
[ENA]
¢þ
>WENV181063179
ODYP01000172
[ODYP] human metagenome; G_DNA_Supragingival plaque
8792
8886
+
SeC
TCA
[ENA]
¢þ
>WENV181064228
ODYP01014728
[ODYP] human metagenome; G_DNA_Supragingival plaque
2025
2119
+
SeC
TCA
[ENA]
¢þ
>WENV181075640
OEAP01000101
[OEAP] human metagenome; G_DNA_Supragingival plaque
28898
28804
-
SeC
TCA
[ENA]
¢þ
>WENV181143194
OEHM01000219
[OEHM] human metagenome; G_DNA_Supragingival plaque
33106
33200
+
SeC
TCA
[ENA]
¢þ
>WENV181160026
OEIK01001444
[OEIK] human metagenome; G_DNA_Supragingival plaque
8992
9086
+
SeC
TCA
[ENA]
¢þ
>WENV181160374
OEIK01006745
[OEIK] human metagenome; G_DNA_Supragingival plaque
1673
1579
-
SeC
TCA
[ENA]
¢þ
>W141143379
AWSH01000007
Gammaproteobacteria
Aggregatibacter sp. oral taxon 458 oral taxon 458 str. W10330 [AWSH]
49301
49207
-
SeC(p)
TCA
[ENA]
¡û
>WENV181579605
OGJZ01000382
[OGJZ] metagenome; Human gut stool
10840
10934
+
SeC
TCA
[ENA]
¢þ
>C181216626
LS483485
Gammaproteobacteria
Aggregatibacter aphrophilus NCTC11096 [LS483485]
430398
430492
+
SeC
TCA
-
¡û
>W1911198294
NRCJ01000007
Gammaproteobacteria
Aggregatibacter kilianii PN_491 [NRCJ]
32304
32210
-
Sec
TCA
[ENA]
¡û
>W1911198410
NRCL01000007
Gammaproteobacteria
Aggregatibacter kilianii PN_649 [NRCL]
85766
85860
+
Sec
TCA
[ENA]
¡û
>W1911198459
NRCM01000009
Gammaproteobacteria
Aggregatibacter kilianii PN_537 [NRCM]
77085
77179
+
Sec
TCA
[ENA]
¡û
>W1911198481
NRCN01000001
Gammaproteobacteria
Aggregatibacter kilianii PN_528 [NRCN]
1029906
1030000
+
Sec
TCA
[ENA]
¡û
>W1911198711
NRCR01000011
Gammaproteobacteria
Aggregatibacter kilianii Melo94 [NRCR]
76770
76864
+
Sec
TCA
[ENA]
¡û
>W1911198762
NRCS01000009
Gammaproteobacteria
Aggregatibacter kilianii Melo83 [NRCS]
76770
76864
+
Sec
TCA
[ENA]
¡û
>W1911199110
NRCZ01000008
Gammaproteobacteria
Aggregatibacter aphrophilus PN_517 [NRCZ]
80630
80724
+
Sec
TCA
[ENA]
¡û
>W1911199151
NRDA01000009
Gammaproteobacteria
Aggregatibacter aphrophilus PN_444 [NRDA]
75156
75250
+
Sec
TCA
[ENA]
¡û
>W1911696697
QMGS01000083
Gammaproteobacteria
Aggregatibacter aphrophilus HK83 [QMGS]
23110
23016
-
Sec
TCA
[ENA]
¡û
>W1810048940
PCGV01000014
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans 310a [PCGV]
20975
20881
-
Sec
TCA
[ENA]
¡û
>W1810578185
QEPM01000004
Gammaproteobacteria
Aggregatibacter segnis C2001002503 [QEPM]
47617
47523
-
Sec
TCA
[ENA]
¡û
>C151025710
CP007502
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans HK1651 [CP007502]
971997
971903
-
SeC
TCA
[Ensembl]
¡û
>C151090344
CP012067
Gammaproteobacteria
Aggregatibacter aphrophilus W10433 [CP012067]
494165
494071
-
SeC
TCA
-
¡û
>W11121428
ADOC01000005
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans ANH9381 [ADOC]
326
232
-
SeC(p)
TCA
[ENA]
¡û
>W1511438911
JUNA01000009
Gammaproteobacteria
Aggregatibacter segnis 933_AAPH [JUNA]
42569
42475
-
SeC
TCA
[ENA]
¡û
>C161048259
CP012958
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans VT1169 [CP012958]
1883881
1883787
-
SeC(p)
TCA
-
¡û
>C161048294
CP012959
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans 624 [CP012959]
1324089
1324183
+
SeC(p)
TCA
[Ensembl]
¡û
>W1610040198
AZTT01000012
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SA2149 [AZTT]
431
337
-
SeC(p)
TCA
[ENA]
¡û
>W1611056440
MAQF01000030
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQF]
18573
18479
-
SeC(p)
TCA
[ENA]
¡û
>W1710037343
AZTT01000012
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SA2149 [AZTT]
431
337
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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