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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.438399 (10 seq.)
>WENV181369606
OFQP01011262
[OFQP] freshwater metagenome; Freshwater Lake
790
716
-
Gly
ACC
[ENA]
¢þ
>WENV170622399
FUWD013101561
[FUWD] metagenome; unknown
632
706
+
Gly
ACC
[ENA]
¢þ
>WENV170630623
FUWD013315978
[FUWD] metagenome; unknown
632
706
+
Gly
ACC
[ENA]
¢þ
>C181020874
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
302171
302245
+
Gly
ACC
-
¡û
>C181020948
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
321255
321329
+
Gly
ACC
-
¡û
>C181021131
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
293405
293479
+
Gly
ACC
-
¡û
>C181021246
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
299085
299159
+
Gly
ACC
-
¡û
>C181021359
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
307694
307768
+
Gly
ACC
-
¡û
>WENV031788
AACY021394883
Marine microbial communities from Global Ocean Sampling (GOS)
211
135
-
Gly
ACC
[ENA]
>WENV057228
AACY023289044
Marine microbial communities from Global Ocean Sampling (GOS)
606
530
-
Gly
ACC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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