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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.43886 (63 seq.)
>W131037574
AMFE01000065
Bacillota
Lactococcus garvieae Tac2 [AMFE]
9241
9154
-
Leu
TAA
[ENA]
¡û
>W1710989055
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
852882
852967
+
Leu
TAA
[ENA]
¡û
>W1710989065
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
858701
858786
+
Leu
TAA
[ENA]
¡û
>W1711006254
LQOE01000087
Bacillota
Lactococcus sp. DD01 [LQOE]
37
126
+
Leu
TAA
[ENA]
¡û
>W1711090156
LTAK01000022
Bacillota
Streptococcus mutans [LTAK]
277
362
+
Leu
TAA
[ENA]
¡û
>W1711207073
LXFC01000025
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
256
171
-
Leu
TAA
[ENA]
¡û
>W1711228325
LXWL01000009
Bacillota
Lactococcus garvieae [LXWL]
239396
239307
-
Leu
TAA
[ENA]
¡û
>W131202421
ASWT01000002
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
1073
1162
+
Leu
TAA
[ENA]
¡û
>W1711942794
NBBK01000022
Bacillota
Lactococcus garvieae [NBBK]
8927
8838
-
Leu
TAA
[ENA]
¡û
>W1711945004
NBFG01000037
Bacillota
Streptococcus mutans [NBFG]
305
220
-
Leu
TAA
[ENA]
¡û
>W1711945044
NBFH01000045
Bacillota
Streptococcus mutans [NBFH]
305
220
-
Leu
TAA
[ENA]
¡û
>WENV180116785
OAQX01005456
[OAQX] human gut metagenome; ENVO:feces
78
163
+
Leu
TAA
[ENA]
¢þ
>W141010306
AHRI01000103
Bacillota
Streptococcus mutans OMZ175 [AHRI]
47
132
+
Leu
TAA
[ENA]
¡û
>W141010509
AHRP01000090
Bacillota
Streptococcus mutans 11SSST2 [AHRP]
303
218
-
Leu
TAA
[ENA]
¡û
>W141010548
AHRR01000010
Bacillota
Streptococcus mutans 15VF2 [AHRR]
49
134
+
Leu
TAA
[ENA]
¡û
>W141010922
AHSE01000083
Bacillota
Streptococcus mutans T4 [AHSE]
49
134
+
Leu
TAA
[ENA]
¡û
>W141010971
AHSG01000005
Bacillota
Streptococcus mutans NFSM1 [AHSG]
90683
90598
-
Leu
TAA
[ENA]
¡û
>W141011347
AHST01000087
Bacillota
Streptococcus mutans ST6 [AHST]
303
218
-
Leu
TAA
[ENA]
¡û
>W141011630
AHTD01000092
Bacillota
Streptococcus mutans SM1 [AHTD]
49
134
+
Leu
TAA
[ENA]
¡û
>WENV180400095
OBRG01000001
[OBRG] human gut metagenome; ENVO:feces
5755
5840
+
Leu
TAA
[ENA]
¢þ
>WENV180400533
OBRI01001589
[OBRI] human gut metagenome; ENVO:feces
577
662
+
Leu
TAA
[ENA]
¢þ
>W141040043
ALYP01000033
Bacillota
Streptococcus mutans B13Sm1 [ALYP]
534
449
-
Leu
TAA
[ENA]
¡û
>W141040060
ALYP01000039
Bacillota
Streptococcus mutans B13Sm1 [ALYP]
341356
341271
-
Leu
TAA
[ENA]
¡û
>W141040400
ALYW01000058
Bacillota
Streptococcus mutans B102SM-B [ALYW]
66721
66636
-
Leu
TAA
[ENA]
¡û
>W141040754
ALZC01000072
Bacillota
Streptococcus mutans B88SM-A [ALZC]
5693
5778
+
Leu
TAA
[ENA]
¡û
>W141040764
ALZC01000073
Bacillota
Streptococcus mutans B88SM-A [ALZC]
5693
5778
+
Leu
TAA
[ENA]
¡û
>WENV181438836
OGDJ01016104
[OGDJ] metagenome; Human gut stool
335
250
-
Leu
TAA
[ENA]
¢þ
>WENV181580303
OGJZ01029659
[OGJZ] metagenome; Human gut stool
78
163
+
Leu
TAA
[ENA]
¢þ
>W141165535
AXSW01000009
Bacillota
Streptococcus mutans PKUSS-HG01 [AXSW]
351232
351147
-
Leu
TAA
[ENA]
¡û
>WENV182149164
OHLG01001135
[OHLG] human gut metagenome; feces
577
662
+
Leu
TAA
[ENA]
¢þ
>WENV182442616
OIKG01004849
[OIKG] human gut metagenome; human gut
626
541
-
Leu
TAA
[ENA]
¢þ
>WENV182496572
OITG01001812
[OITG] human gut metagenome; human gut
304
219
-
Leu
TAA
[ENA]
¢þ
>WENV182842442
OKIE01000617
[OKIE] human gut metagenome; human gut
484
569
+
Leu
TAA
[ENA]
¢þ
>WENV183014924
OLEM01006102
[OLEM] human gut metagenome; human gut
580
665
+
Leu
TAA
[ENA]
¢þ
>C191222939
LR594042
Bacillota
Streptococcus equinus NCTC8133 [LR594042]
21238
21323
+
Leu
TAA
-
¡û
>W1910583202
JXJU01000004
Bacillota
Lactococcus fujiensis JCM 16395 [JXJU]
195010
194925
-
Leu
TAA
[ENA]
¡û
>W1910641577
LTDA01000020
Bacillota
Lactococcus garvieae KS1546 [LTDA]
81
169
+
Leu
TAA
[ENA]
¡û
>W1810010482
BFFO01000003
Bacillota
Lactococcus termiticola NtB2 [BFFO]
219185
219100
-
Leu
TAA
[ENA]
¡û
>W1810907661
QVHX01000032
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
780
695
-
Leu
TAA
[ENA]
¡û
>C11121145
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
23242
23327
+
Leu
TAA
[Ensembl]
¡û
>W11139888
AEKN01000011
Bacillota
Streptococcus downei F0415 [AEKN]
598
511
-
Leu
TAA
[ENA]
¡û
>W11139897
AEKN01000017
Bacillota
Streptococcus downei F0415 [AEKN]
31628
31541
-
Leu
TAA
[ENA]
¡û
>W11179486
AGGN01000306
Bacillota
Streptococcus sobrinus TCI-89 [AGGN]
60
147
+
Leu
TAA
[ENA]
¡û
>W11179566
AGGQ01000356
Bacillota
Streptococcus sobrinus TCI-119 [AGGQ]
448
361
-
Leu
TAA
[ENA]
¡û
>W11179643
AGGS01000237
Bacillota
Streptococcus sobrinus TCI-124 [AGGS]
60
147
+
Leu
TAA
[ENA]
¡û
>W11179862
AGHA01000338
Bacillota
Streptococcus sobrinus TCI-363 [AGHA]
253
166
-
Leu
TAA
[ENA]
¡û
>W11180173
AGHL01000285
Bacillota
Streptococcus sobrinus TCI-396 [AGHL]
255
168
-
Leu
TAA
[ENA]
¡û
>C121001138
AP012336
Bacillota
Streptococcus mutans LJ23 [AP012336]
22571
22656
+
Leu
TAA
-
¡û
>C121001166
AP012336
Bacillota
Streptococcus mutans LJ23 [AP012336]
438419
438504
+
Leu
TAA
-
¡û
>C121017960
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
24310
24395
+
Leu
TAA
[Ensembl]
¡û
>C121017978
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
79790
79875
+
Leu
TAA
[Ensembl]
¡û
>W1610044307
BBAL01000007
Bacillota
Lactococcus fujiensis JCM 16395 [BBAL]
119963
119878
-
Leu
TAA
[ENA]
¡û
>W1610044869
BBAW01000018
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [BBAW]
485
570
+
Leu
TAA
[ENA]
¡û
>W1610514105
FLZS01000001
Bacillota
Streptococcus macedonicus 679 [FLZS]
24300
24385
+
Leu
TAA
[ENA]
¡û
>W1610514124
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
5539
5624
+
Leu
TAA
[ENA]
¡û
>W1610843931
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
852882
852967
+
Leu
TAA
[ENA]
¡û
>W1610843941
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
858701
858786
+
Leu
TAA
[ENA]
¡û
>W1610856904
LQOE01000087
Bacillota
Lactococcus sp. DD01 [LQOE]
37
126
+
Leu
TAA
[ENA]
¡û
>W1610924500
LTAK01000022
Bacillota
Streptococcus mutans [LTAK]
277
362
+
Leu
TAA
[ENA]
¡û
>W1610995103
LXFC01000025
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
256
171
-
Leu
TAA
[ENA]
¡û
>W1611012242
LXWL01000009
Bacillota
Lactococcus garvieae [LXWL]
239396
239307
-
Leu
TAA
[ENA]
¡û
>W1710041467
BBAL01000007
Bacillota
Lactococcus fujiensis JCM 16395 [BBAL]
119963
119878
-
Leu
TAA
[ENA]
¡û
>W1710041967
BBAW01000018
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [BBAW]
485
570
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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