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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.439628 (32 seq.)
>W131180549
ARNE01000021
Bacteroidota
Eudoraea adriatica DSM 19308 [ARNE]
6103
6031
-
Arg
CCT
[ENA]
¡û
>W1711223951
LXTR01000029
Bacteroidota
Flavobacteriaceae bacterium CP2B [LXTR]
5021
4947
-
Arg
CCT
[ENA]
¡û
>W131229955
AUHF01000001
Bacteroidota
Christiangramia portivictoriae DSM 23547 [AUHF]
322936
323010
+
Arg
CCT
[ENA]
¡û
>C171047811
CP016359
Bacteroidota
Christiangramia flava JLT2011 [CP016359]
1796754
1796826
+
Arg
CCT
-
¡û
>WENV180208629
OBAJ01010478
[OBAJ] marine metagenome; Coastal water
83
11
-
Arg
CCT
[ENA]
¢þ
>WENV180212378
OBAN01017856
[OBAN] marine metagenome; ENVO 00002150
224
296
+
Arg
CCT
[ENA]
¢þ
>WENV183738254
PJUD01137945
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
401
329
-
Arg
CCT
[ENA]
¢þ
>WENV183738459
PJUE01000002
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
490787
490715
-
Arg
CCT
[ENA]
¢þ
>WENV183740736
PJUF01008059
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
456
528
+
Arg
CCT
[ENA]
¢þ
>WENV170337723
CETA01151585
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
695
769
+
Arg
CCT
[ENA]
¢þ
>WENV170860622
MDTB01053780
[MDTB] marine metagenome; seawater
2677
2751
+
Arg
CCT
[ENA]
¢þ
>C181161948
CP028136
Bacteroidota
Christiangramia fulva SH35 [CP028136]
1070445
1070373
-
Arg
CCT
-
¡û
>C181225830
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
343774
343702
-
Arg
CCT
-
¡û
>C191120523
CP034160
Bacteroidota
Epilithonimonas vandammei H6466 [CP034160]
1614030
1613958
-
Arg
CCT
-
¡û
>C191120559
CP034161
Bacteroidota
Epilithonimonas vandammei F5649 [CP034161]
2087484
2087556
+
Arg
CCT
-
¡û
>C191120896
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1237490
1237562
+
Arg
CCT
-
¡û
>C191120951
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
1570207
1570135
-
Arg
CCT
-
¡û
>W141809564
JPRO01000044
Bacteroidota
Chryseobacterium luteum [JPRO]
1816
1742
-
Arg
CCT
[ENA]
¡û
>W1911701357
QNUH01000006
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
190998
191070
+
Arg
CCT
[ENA]
¡û
>W1911749785
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
2318279
2318207
-
Arg
CCT
[ENA]
¡û
>W1911749826
QWIV01000013
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
1030422
1030350
-
Arg
CCT
[ENA]
¡û
>SRA1023473
SRR035084.106146
454 Sequencing (SRP001805)
60
132
+
Arg
CCT
[SRA]
>SRA1024772
SRR035084.397798
454 Sequencing (SRP001805)
63
135
+
Arg
CCT
[SRA]
>SRA1051791
SRR035098.77166
454 Sequencing (SRP001819)
222
150
-
Arg
CCT
[SRA]
>SRA1053676
SRR035098.464795
454 Sequencing (SRP001819)
241
313
+
Arg
CCT
[SRA]
>W1511432552
JUGP01000001
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
746469
746543
+
Arg
CCT
[ENA]
¡û
>W1511685118
LFND01000005
Bacteroidota
Chryseobacterium angstadtii KM [LFND]
226550
226478
-
Arg
CCT
[ENA]
¡û
>W1710514903
FNBH01000003
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
178613
178539
-
Arg
CCT
[ENA]
¡û
>W1710540564
FNWX01000013
Bacteroidota
Epilithonimonas hominis [FNWX]
51568
51496
-
Arg
CCT
[ENA]
¡û
>W1710570420
FOVD01000003
Bacteroidota
Chryseobacterium oleae [FOVD]
267369
267441
+
Arg
CCT
[ENA]
¡û
>W1710600178
FTPU01000005
Bacteroidota
Epilithonimonas bovis DSM 19482 [FTPU]
29424
29350
-
Arg
CCT
[ENA]
¡û
>W1710608038
FXAO01000006
Bacteroidota
Arenibacter troitsensis [FXAO]
323340
323266
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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