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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.440908 (71 seq.)
>W1710875628
LMON01000028
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
93760
93831
+
Cys
GCA
[ENA]
¡û
>W1711184915
LWMY01000003
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
185351
185280
-
Cys
GCA
[ENA]
¡û
>W1711185057
LWNB01000005
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
55156
55227
+
Cys
GCA
[ENA]
¡û
>W1711466029
MJLT01000006
Actinomycetota
Arthrobacter sp. SW1 [MJLT]
84397
84326
-
Cys
GCA
[ENA]
¡û
>W1711660620
MQSU01000002
Actinomycetota
Boudabousia liubingyangii VUL4_1 [MQSU]
432739
432666
-
Cys
GCA
[ENA]
¡û
>C171062235
CP017421
Actinomycetota
Arthrobacter sp. ZXY-2 [CP017421]
2255888
2255959
+
Cys
GCA
-
¡û
>w024126
AAYI02000004
Actinomycetota
Schaalia odontolytica ATCC 17982 [AAYI]
1530218
1530145
-
Cys
GCA
[ENA]
¡û
>WENV180011387
FLSK01002734
[FLSK] metagenome; saliva
312
383
+
Cys
GCA
[ENA]
¢þ
>WENV180011389
FLSK01002734
[FLSK] metagenome; saliva
614
685
+
Cys
GCA
[ENA]
¢þ
>WENV180011562
FLSK01004768
[FLSK] metagenome; saliva
1
72
+
Cys
GCA
[ENA]
¢þ
>W141006976
AGWQ01000006
Actinomycetota
Schaalia turicensis ACS-279-V-Col4 [AGWQ]
213417
213346
-
Cys
GCA
[ENA]
¡û
>WENV180151436
OAUO01007834
[OAUO] human gut metagenome; faeces
1137
1208
+
Cys
GCA
[ENA]
¢þ
>WENV180191351
OAXB01026742
[OAXB] human gut metagenome; faeces
245
174
-
Cys
GCA
[ENA]
¢þ
>WENV180232874
OBCP01000020
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
233458
233387
-
Cys
GCA
[ENA]
¢þ
>WENV180639557
OCRL01000029
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
207571
207642
+
Cys
GCA
[ENA]
¢þ
>WENV180640484
OCRM01000024
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
207571
207642
+
Cys
GCA
[ENA]
¢þ
>WENV180708466
ODFJ01001944
[ODFJ] human metagenome; G_DNA_Tongue dorsum
6510
6581
+
Cys
GCA
[ENA]
¢þ
>WENV180725049
ODGR01008537
[ODGR] human metagenome; G_DNA_Tongue dorsum
2522
2451
-
Cys
GCA
[ENA]
¢þ
>WENV180768677
ODIG01012979
[ODIG] human metagenome; G_DNA_Tongue dorsum
2171
2242
+
Cys
GCA
[ENA]
¢þ
>WENV180780299
ODIN01113408
[ODIN] human metagenome; G_DNA_Throat
108
179
+
Cys
GCA
[ENA]
¢þ
>WENV180795133
ODIZ01034028
[ODIZ] human metagenome; G_DNA_Tongue dorsum
543
472
-
Cys
GCA
[ENA]
¢þ
>WENV180807755
ODJI01009350
[ODJI] human metagenome; G_DNA_Tongue dorsum
2207
2278
+
Cys
GCA
[ENA]
¢þ
>WENV180843739
ODKN01009973
[ODKN] human metagenome; G_DNA_Supragingival plaque
2606
2535
-
Cys
GCA
[ENA]
¢þ
>WENV180861111
ODLE01000903
[ODLE] human metagenome; G_DNA_Tongue dorsum
11861
11790
-
Cys
GCA
[ENA]
¢þ
>WENV180877827
ODLV01003112
[ODLV] human metagenome; G_DNA_Tongue dorsum
2784
2855
+
Cys
GCA
[ENA]
¢þ
>WENV180881186
ODLZ01211252
[ODLZ] human metagenome; G_DNA_Tongue dorsum
89
160
+
Cys
GCA
[ENA]
¢þ
>WENV180890238
ODMO01000334
[ODMO] human metagenome; G_DNA_Tongue dorsum
16929
17000
+
Cys
GCA
[ENA]
¢þ
>WENV180960663
ODUM01112031
[ODUM] human metagenome; G_DNA_Tongue dorsum
147
76
-
Cys
GCA
[ENA]
¢þ
>WENV180977537
ODUZ01001641
[ODUZ] human metagenome; G_DNA_Tongue dorsum
906
977
+
Cys
GCA
[ENA]
¢þ
>WENV181017545
ODWR01133371
[ODWR] human metagenome; G_DNA_Tongue dorsum
108
179
+
Cys
GCA
[ENA]
¢þ
>WENV181042108
ODXS01168784
[ODXS] human metagenome; G_DNA_Tongue dorsum
148
77
-
Cys
GCA
[ENA]
¢þ
>WENV181045070
ODXV01141065
[ODXV] human metagenome; G_DNA_Tongue dorsum
147
76
-
Cys
GCA
[ENA]
¢þ
>WENV181106351
OEED01114833
[OEED] human metagenome; G_DNA_Tongue dorsum
89
160
+
Cys
GCA
[ENA]
¢þ
>WENV181109493
OEEJ01088129
[OEEJ] human metagenome; G_DNA_Tongue dorsum
147
76
-
Cys
GCA
[ENA]
¢þ
>WENV181151810
OEHW01149218
[OEHW] human metagenome; G_DNA_Tongue dorsum
145
74
-
Cys
GCA
[ENA]
¢þ
>W141169688
AXWO01000042
Actinomycetota
Glycomyces arizonensis DSM 44726 [AXWO]
7552
7625
+
Cys
GCA
[ENA]
¡û
>W141278871
JAFW01000001
Actinomycetota
Arthrobacter sp. 31Y [JAFW]
4399697
4399626
-
Cys
GCA
[ENA]
¡û
>WENV182831694
OKEG01000165
[OKEG] human gut metagenome; human gut
96
167
+
Cys
GCA
[ENA]
¢þ
>W141284187
JALQ01000042
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
131677
131606
-
Cys
GCA
[ENA]
¡û
>C181168838
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
187390
187319
-
Cys
GCA
-
¡û
>C191173811
CP040006
Actinomycetota
Schaalia odontolytica XH001 [CP040006]
1357202
1357131
-
Cys
GCA
-
¡û
>W141758595
JNYS01000040
Actinomycetota
Glycomyces tenuis [JNYS]
20242
20169
-
Cys
GCA
[ENA]
¡û
>C09100286
CP001341
Actinomycetota
Pseudarthrobacter chlorophenolicus A6 [CP001341]
1871593
1871522
-
Cys
GCA
[Ensembl]
¡û
>W1911765542
QXCY01000001
Actinomycetota
Promicromonospora thailandica SAI-039 [QXCY]
4857060
4857131
+
Cys
GCA
[ENA]
¡û
>W1810058035
PDJD01000001
Actinomycetota
Serinibacter salmoneus DSM 21801 [PDJD]
1297706
1297777
+
Cys
GCA
[ENA]
¡û
>W1810167408
PJIL01000012
Actinomycetota
Arthrobacter sp. Y81 [PJIL]
88545
88616
+
Cys
GCA
[ENA]
¡û
>W1810368316
PVZO01000002
Actinomycetota
Arthrobacter woluwensis NM-35 [PVZO]
301073
301144
+
Cys
GCA
[ENA]
¡û
>W1810424189
PYUI01000022
Actinomycetota
Arthrobacter sp. H-02-3 LBUM149 [PYUI]
2499
2570
+
Cys
GCA
[ENA]
¡û
>W1810573692
QEKX01000001
Actinomycetota
Promicromonospora sukumoe SAI-064 [QEKX]
3703932
3703861
-
Cys
GCA
[ENA]
¡û
>W1810677253
QKMO01000008
Actinomycetota
Arthrobacter sp. RC1.1 241 [QKMO]
45666
45737
+
Cys
GCA
[ENA]
¡û
>W1510010669
BBLY01000001
Actinomycetota
Demequina pelophila NBRC 109393 [BBLY]
614907
614836
-
Cys
GCA
[ENA]
¡û
>W1510015420
BBQZ01000002
Actinomycetota
Demequina salsinemoris NBRC 105323 [BBQZ]
375048
374977
-
Cys
GCA
[ENA]
¡û
>W1510015482
BBRA01000002
Actinomycetota
Demequina flava NBRC 105854 [BBRA]
277026
277097
+
Cys
GCA
[ENA]
¡û
>W1510015485
BBRA01000002
Actinomycetota
Demequina flava NBRC 105854 [BBRA]
277675
277746
+
Cys
GCA
[ENA]
¡û
>C10100453
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
911962
912033
+
Cys
GCA
[Ensembl]
¡û
>W1511319622
JPZK01000025
Actinomycetota
Arthrobacter sp. MWB30 [JPZK]
77629
77558
-
Cys
GCA
[ENA]
¡û
>W11143109
AEPP01000001
Actinomycetota
Actinomyces sp. oral taxon 180 oral taxon 180 str. F0310 [AEPP]
228296
228225
-
Cys
GCA
[ENA]
¡û
>C161068082
CP014196
Actinomycetota
Arthrobacter sp. ATCC 21022 [CP014196]
1773800
1773729
-
Cys
GCA
-
¡û
>W121106107
ALCB01000108
Actinomycetota
Actinomyces sp. ICM39 [ALCB]
81221
81150
-
Cys
GCA
[ENA]
¡û
>W1610051468
BBGW01000524
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BBGW]
857
786
-
Cys
GCA
[ENA]
¡û
>W1610095032
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
23621
23692
+
Cys
GCA
[ENA]
¡û
>W1610737974
LMON01000028
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
93760
93831
+
Cys
GCA
[ENA]
¡û
>W1710047846
BBGW01000524
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BBGW]
857
786
-
Cys
GCA
[ENA]
¡û
>W1710050308
BBRJ01000002
Actinomycetota
Demequina sp. NBRC 110053 [BBRJ]
61190
61261
+
Cys
GCA
[ENA]
¡û
>W1710050519
BBRN01000004
Actinomycetota
Demequina sp. NBRC 110057 [BBRN]
446025
445954
-
Cys
GCA
[ENA]
¡û
>W1710050522
BBRN01000004
Actinomycetota
Demequina sp. NBRC 110057 [BBRN]
445513
445442
-
Cys
GCA
[ENA]
¡û
>W1710097827
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
23621
23692
+
Cys
GCA
[ENA]
¡û
>W1710550086
FOEZ01000009
Actinomycetota
Arthrobacter sp. OV608 [FOEZ]
77654
77583
-
Cys
GCA
[ENA]
¡û
>W1710603431
FUZB01000003
Actinomycetota
Arthrobacter sp. 31Cvi3.1E [FUZB]
285810
285881
+
Cys
GCA
[ENA]
¡û
>W1710603530
FUZD01000011
Actinomycetota
Arthrobacter sp. 49Tsu3.1M3 [FUZD]
50184
50255
+
Cys
GCA
[ENA]
¡û
>W1710605027
FVZL01000005
Actinomycetota
Arthrobacter sp. P2b [FVZL]
76655
76726
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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