This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44188 (37 seq.)
>W1711385092
MEDR01000172
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
427
515
+
Leu
TAA
[ENA]
¡û
>W131225326
AUDM01000002
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
46340
46252
-
Leu
TAA
[ENA]
¡û
>WENV180039992
LLBY010280481
[LLBY] soil metagenome; soil from tomato rhizosphere
2960
2874
-
Leu
TAA
[ENA]
¡û
>WENV180041153
LLBZ010053577
[LLBZ] soil metagenome; soil from tomato rhizosphere
1120
1034
-
Leu
TAA
[ENA]
¡û
>WENV181169932
OEIV010015388
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
78
164
+
Leu
TAA
[ENA]
¡û
>WENV183731168
PJTS01014919
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
231
145
-
Leu
TAA
[ENA]
¡û
>WENV170157558
CEOJ01070134
[CEOJ] marine metagenome genome assembly TARA_034_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
237
325
+
Leu
TAA
[ENA]
¡û
>WENV170680842
LFEF01027062
[LFEF] freshwater metagenome; waterbloom
7498
7586
+
Leu
TAA
[ENA]
¡û
>W1910578012
JUIX01000018
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
31786
31872
+
Leu
TAA
[ENA]
¡û
>W1910578014
JUIX01000018
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
32021
32107
+
Leu
TAA
[ENA]
¡û
>W1910578016
JUIX01000018
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
32212
32298
+
Leu
TAA
[ENA]
¡û
>W1810696099
QLSZ01000006
Bacteroidota
Flavobacterium aciduliphilum DSM 25663 [QLSZ]
174554
174640
+
Leu
TAA
[ENA]
¡û
>W2010310976
CABWML010000003
Bacteroidota
Flavobacterium sp. 9AF [CABWML]
95250
95164
-
Leu
TAA
[ENA]
¡û
>W2010686928
JACFYW010000005
Bacteroidota
Flavobacterium sp. xlx-221 [JACFYW]
39744
39830
+
Leu
TAA
[ENA]
¡û
>W2010762249
JUIX01000018
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
31786
31872
+
Leu
TAA
[ENA]
¡û
>W2010762251
JUIX01000018
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
32021
32107
+
Leu
TAA
[ENA]
¡û
>W2010762253
JUIX01000018
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
32212
32298
+
Leu
TAA
[ENA]
¡û
>W2011691674
SSNZ01000006
Bacteroidota
Flavobacterium sp. CC-CTC003 [SSNZ]
104380
104466
+
Leu
TAA
[ENA]
¡û
>W2011691678
SSNZ01000007
Bacteroidota
Flavobacterium sp. CC-CTC003 [SSNZ]
13304
13218
-
Leu
TAA
[ENA]
¡û
>W2011980707
VDCZ01000003
Bacteroidota
Flavobacterium sp. TP390 [VDCZ]
245040
244954
-
Leu
TAA
[ENA]
¡û
>W2012424932
WQLW01000003
Bacteroidota
Flavobacterium sp. TP390 [WQLW]
245040
244954
-
Leu
TAA
[ENA]
¡û
>W2110026605
BMIM01000001
Bacteroidota
Flavobacterium lutivivi CGMCC 1.15347 [BMIM]
33015
33101
+
Leu
TAA
[ENA]
¡û
>C201295374
CP058278
Bacteroidota
Flavobacterium sp. P2-65 [CP058278]
1354560
1354474
-
Leu
TAA
-
¡û
>C201302355
CP059431
Bacteroidota
Flavobacterium sp. xlx-214 [CP059431]
1676581
1676495
-
Leu
TAA
-
¡û
>C231441719
CP101751
Bacteroidota
Flavobacterium cerinum C1 [CP101751]
1389354
1389268
-
Leu
TAA
-
¡û
>C231441721
CP101751
Bacteroidota
Flavobacterium cerinum C1 [CP101751]
1122165
1122079
-
Leu
TAA
-
¡û
>C231452626
CP102382
Bacteroidota
Myroides sp. SCSIO 72103 [CP102382]
2014451
2014365
-
Leu
TAA
-
¡û
>C231452628
CP102382
Bacteroidota
Myroides sp. SCSIO 72103 [CP102382]
2014205
2014119
-
Leu
TAA
-
¡û
>C231452630
CP102382
Bacteroidota
Myroides sp. SCSIO 72103 [CP102382]
2014010
2013924
-
Leu
TAA
-
¡û
>C231524982
CP110002
Bacteroidota
Flavobacterium sp. N2155 [CP110002]
882282
882368
+
Leu
TAA
-
¡û
>C231524984
CP110002
Bacteroidota
Flavobacterium sp. N2155 [CP110002]
882529
882615
+
Leu
TAA
-
¡û
>C231524986
CP110002
Bacteroidota
Flavobacterium sp. N2155 [CP110002]
882725
882811
+
Leu
TAA
-
¡û
>W1710540864
FNXE01000027
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
17801
17715
-
Leu
TAA
[ENA]
¡û
>W1710540866
FNXE01000027
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
17566
17478
-
Leu
TAA
[ENA]
¡û
>W1710540868
FNXE01000027
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
17374
17286
-
Leu
TAA
[ENA]
¡û
>W1710570717
FOVI01000008
Bacteroidota
Paenimyroides ummariense [FOVI]
92813
92901
+
Leu
TAA
[ENA]
¡û
>W1710570720
FOVI01000008
Bacteroidota
Paenimyroides ummariense [FOVI]
93141
93229
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK