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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.442667 (21 seq.)
>C025180
BA000022
Cyanobacteriota
Synechocystis sp. PCC 6803 [BA000022]
2092400
2092471
+
Asn
GTT
[Ensembl]
¡û
>W141091968
AUZM01000108
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
2499
2570
+
Asn
GTT
[ENA]
¡û
>WENV170333240
CESY01020361
[CESY] marine metagenome genome assembly TARA_098_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
420
494
+
Asn
GTT
[ENA]
¢þ
>WENV170573733
FLYL01023717
[FLYL] hot springs metagenome; Sediment
1625
1551
-
Asn
GTT
[ENA]
¢þ
>CHL1810041425
KY427341
Viridiplantae
Diplaziopsis cavaleriana (KY427341)
128768
128841
+
Asn
GTT
[ENA]
¡û
>CHL1810041429
KY427341
Viridiplantae
Diplaziopsis cavaleriana (KY427341)
106115
106042
-
Asn
GTT
[ENA]
¡û
>CHL1810041448
KY427342
Viridiplantae
Diplaziopsis javanica (KY427342)
128718
128791
+
Asn
GTT
[ENA]
¡û
>CHL1810041452
KY427342
Viridiplantae
Diplaziopsis javanica (KY427342)
105987
105914
-
Asn
GTT
[ENA]
¡û
>CHL1810041564
KY427347
Viridiplantae
Diplazium unilobum (KY427347)
105545
105472
-
Asn
GTT
[ENA]
¡û
>CHL1810041606
KY427349
Viridiplantae
Homalosorus pycnocarpos (KY427349)
129027
129100
+
Asn
GTT
[ENA]
¡û
>CHL1810041610
KY427349
Viridiplantae
Homalosorus pycnocarpos (KY427349)
106319
106246
-
Asn
GTT
[ENA]
¡û
>C151027478
CP007542
Cyanobacteriota
Synechocystis sp. PCC 6714 [CP007542]
736362
736291
-
Asn
GTT
[Ensembl]
¡û
>W10111348
ADDH01000089
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
153913
153840
-
Asn
GTT
[ENA]
¡û
>W11114291
ADDH01000089
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
153913
153840
-
Asn
GTT
[ENA]
¡û
>W1511585678
LAYT01000258
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
6672
6599
-
Asn
GTT
[ENA]
¡û
>C121000601
AP012276
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. GT-I [AP012276]
2090118
2090189
+
Asn
GTT
[Ensembl]
¡û
>C121000640
AP012277
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. PCC-N [AP012277]
2090215
2090286
+
Asn
GTT
[Ensembl]
¡û
>C161046050
CP012832
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP012832]
2090291
2090362
+
Asn
GTT
-
¡û
>C161103143
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
1382491
1382564
+
Asn
GTT
-
¡û
>C131004684
CP003607
Cyanobacteriota
Oscillatoria acuminata PCC 6304 [CP003607]
2297427
2297354
-
Asn
GTT
[Ensembl]
¡û
>C131002596
CP003265
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP003265]
2089668
2089739
+
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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