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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.443938 (41 seq.)
>W1710805234
LJZW01000004
Gammaproteobacteria
Xylella fastidiosa [LJZW]
63885
63959
+
Val
GAC
[ENA]
¡û
>W1710809644
LKES01000016
Gammaproteobacteria
Xylella fastidiosa [LKES]
1475
1401
-
Val
GAC
[ENA]
¡û
>W1711055761
LRVE01000024
Gammaproteobacteria
Xylella fastidiosa [LRVE]
57405
57479
+
Val
GAC
[ENA]
¡û
>W1711055960
LRVI01000033
Gammaproteobacteria
Xylella fastidiosa [LRVI]
35686
35612
-
Val
GAC
[ENA]
¡û
>W1711078020
LSMJ01000010
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
9453
9379
-
Val
GAC
[ENA]
¡û
>W1711618083
MPAZ01000014
Gammaproteobacteria
Xylella fastidiosa [MPAZ]
19227
19153
-
Val
GAC
[ENA]
¡û
>C171002845
CP010051
Gammaproteobacteria
Xylella fastidiosa Fb7 [CP010051]
1156032
1155958
-
Val
GAC
-
¡û
>C171113969
CP020870
Gammaproteobacteria
Xylella fastidiosa subsp. pauca De Donno [CP020870]
2008364
2008290
-
Val
GAC
-
¡û
>C027150
AE003849
Gammaproteobacteria
Xylella fastidiosa 9a5c [AE003849]
926649
926723
+
Val
GAC
[Ensembl]
¡û
>W141097005
AVGA01000016
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex Griffin-1 [AVGA]
1502
1428
-
Val
GAC
[ENA]
¡û
>W141194312
AYSY01000107
Gammaproteobacteria
Xanthomonas oryzae pv. oryzicola MAI10 [AYSY]
15537
15611
+
Val
GAC
[ENA]
¡û
>C08011608
CP001011
Gammaproteobacteria
Xylella fastidiosa M23 [CP001011]
2036313
2036242
-
Val
GAC
[Ensembl]
¡û
>WENV183744378
PJUK01014137
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
497
423
-
Val
GAC
[ENA]
¢þ
>C181008018
CP009823
Gammaproteobacteria
Xylella fastidiosa J1a12 [CP009823]
1462425
1462351
-
Val
GAC
-
¡û
>C181008063
CP009826
Gammaproteobacteria
Xylella fastidiosa Pr8x [CP009826]
2147789
2147715
-
Val
GAC
-
¡û
>C181008160
CP009885
Gammaproteobacteria
Xylella fastidiosa Hib4 [CP009885]
2268513
2268439
-
Val
GAC
-
¡û
>C181020266
CP016610
Gammaproteobacteria
Xylella fastidiosa Salento-2 [CP016610]
2008384
2008310
-
Val
GAC
-
¡û
>W1911582013
PHFP01000013
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8071 [PHFP]
1596
1522
-
Val
GAC
[ENA]
¡û
>W1911582116
PHFR01000016
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7970 [PHFR]
1606
1532
-
Val
GAC
[ENA]
¡û
>W1911582158
PHFS01000014
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex CFBP8078 [PHFS]
58817
58891
+
Val
GAC
[ENA]
¡û
>W1911582255
PHFU01000015
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8351 [PHFU]
61236
61310
+
Val
GAC
[ENA]
¡û
>W1911582297
PHFV01000016
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi CFBP8356 [PHFV]
1592
1518
-
Val
GAC
[ENA]
¡û
>W1911710231
QPQW01000128
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex IVIA5901 [QPQW]
59281
59355
+
Val
GAC
[ENA]
¡û
>W1911726764
QTJT01000031
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL1732 [QTJT]
1514
1440
-
Val
GAC
[ENA]
¡û
>W1810078153
PEJT01000006
Gammaproteobacteria
Stenotrophomonas sp. LMG 10879 LMG 10879 [PEJT]
119491
119565
+
Val
GAC
[ENA]
¡û
>W1810394246
PYBO01000006
Gammaproteobacteria
Stenotrophomonas maltophilia XH.SM.1 [PYBO]
78850
78776
-
Val
GAC
[ENA]
¡û
>C151011018
CP006696
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi Ann-1 [CP006696]
1139648
1139574
-
Val
GAC
[Ensembl]
¡û
>C151035420
CP007810
Gammaproteobacteria
Xanthomonas oryzae pv. oryzicola YM15 [CP007810]
2563204
2563130
-
Val
GAC
[Ensembl]
¡û
>C151087971
CP011957
Gammaproteobacteria
Xanthomonas oryzae pv. oryzicola BXOR1 [CP011957]
1829077
1829151
+
Val
GAC
[Ensembl]
¡û
>W1511436644
JUJW01000002
Gammaproteobacteria
Xylella fastidiosa CoDiRO [JUJW]
332603
332677
+
Val
GAC
[ENA]
¡û
>W11158565
AFDJ01000088
Gammaproteobacteria
Xylella fastidiosa EB92.1 [AFDJ]
59478
59552
+
Val
GAC
[ENA]
¡û
>C161038381
CP011971
Gammaproteobacteria
Steroidobacter denitrificans DSM 18526 [CP011971]
1600871
1600945
+
Val
GAC
[Ensembl]
¡û
>W1610521513
JNBT01000009
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
62012
62086
+
Val
GAC
[ENA]
¡û
>W1610669091
LJZW01000004
Gammaproteobacteria
Xylella fastidiosa [LJZW]
63885
63959
+
Val
GAC
[ENA]
¡û
>W1610673750
LKES01000016
Gammaproteobacteria
Xylella fastidiosa [LKES]
1475
1401
-
Val
GAC
[ENA]
¡û
>W1610896807
LRVE01000024
Gammaproteobacteria
Xylella fastidiosa [LRVE]
57405
57479
+
Val
GAC
[ENA]
¡û
>W1610897006
LRVI01000033
Gammaproteobacteria
Xylella fastidiosa [LRVI]
35686
35612
-
Val
GAC
[ENA]
¡û
>W1610917036
LSMJ01000010
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
9453
9379
-
Val
GAC
[ENA]
¡û
>W1710585683
FQWN01000015
Gammaproteobacteria
Xylella fastidiosa [FQWN]
58071
58145
+
Val
GAC
[ENA]
¡û
>W1710620798
JNBT01000009
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
62012
62086
+
Val
GAC
[ENA]
¡û
>W1710657813
JXHI01000118
Gammaproteobacteria
Xanthomonas oryzae pv. oryzicola [JXHI]
11621
11695
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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