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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.443945 (35 seq.)
>C171131246
LT821323
Chlamydiota
Chlamydia suis [LT821323]
848166
848095
-
Gly
GCC
-
¡û
>C006637
AE002161
Chlamydiota
Chlamydia pneumoniae AR39 [AE002161]
1109835
1109906
+
Gly
GCC
[Ensembl]
¡û
>C006720
BA000008
Chlamydiota
Chlamydia pneumoniae J138 [BA000008]
960928
960857
-
Gly
GCC
[Ensembl]
¡û
>C006758
AE009440
Chlamydiota
Chlamydia pneumoniae TW-183 [AE009440]
958930
958859
-
Gly
GCC
[Ensembl]
¡û
>WENV180360661
OBNU01008267
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
969
898
-
Gly
GCC
[ENA]
¢þ
>WENV180361106
OBNU01121652
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
158
87
-
Gly
GCC
[ENA]
¢þ
>WENV183693296
ORMF012057223
[ORMF] groundwater metagenome; groundwater
14500
14429
-
Gly
GCC
[ENA]
¢þ
>C181203815
LS398099
Chlamydiota
Chlamydia suis [LS398099]
850986
850915
-
Gly
GCC
-
¡û
>C181232383
LT999998
Chlamydiota
Chlamydia suis [LT999998]
847324
847253
-
Gly
GCC
-
¡û
>C181232420
LT999999
Chlamydiota
Chlamydia suis [LT999999]
850665
850594
-
Gly
GCC
-
¡û
>W1910341393
FTPV01000001
Chlamydiota
Chlamydia suis [FTPV]
847324
847253
-
Gly
GCC
[ENA]
¡û
>W1910341472
FTPX01000003
Chlamydiota
Chlamydia suis [FTPX]
448618
448547
-
Gly
GCC
[ENA]
¡û
>W1910341588
FTQA01000002
Chlamydiota
Chlamydia suis [FTQA]
452006
451935
-
Gly
GCC
[ENA]
¡û
>W1910341615
FTQB01000001
Chlamydiota
Chlamydia suis [FTQB]
850655
850584
-
Gly
GCC
[ENA]
¡û
>W1910341699
FTQD01000002
Chlamydiota
Chlamydia suis [FTQD]
448809
448738
-
Gly
GCC
[ENA]
¡û
>W1910341726
FTQE01000001
Chlamydiota
Chlamydia suis [FTQE]
850986
850915
-
Gly
GCC
[ENA]
¡û
>W1910341773
FTQF01000003
Chlamydiota
Chlamydia suis [FTQF]
454758
454687
-
Gly
GCC
[ENA]
¡û
>W1910341884
FTQI01000003
Chlamydiota
Chlamydia suis [FTQI]
337685
337614
-
Gly
GCC
[ENA]
¡û
>W1910341958
FTQK01000005
Chlamydiota
Chlamydia suis [FTQK]
451809
451738
-
Gly
GCC
[ENA]
¡û
>W1910341987
FTQL01000002
Chlamydiota
Chlamydia suis [FTQL]
645936
645865
-
Gly
GCC
[ENA]
¡û
>W1910342061
FTQN01000005
Chlamydiota
Chlamydia suis [FTQN]
635047
634976
-
Gly
GCC
[ENA]
¡û
>W1910342104
FTQO01000003
Chlamydiota
Chlamydia suis [FTQO]
573769
573698
-
Gly
GCC
[ENA]
¡û
>W1910342145
FTQP01000003
Chlamydiota
Chlamydia suis [FTQP]
282112
282041
-
Gly
GCC
[ENA]
¡û
>W1910342180
FTQQ01000002
Chlamydiota
Chlamydia suis [FTQQ]
334074
334003
-
Gly
GCC
[ENA]
¡û
>W1910342217
FTQR01000003
Chlamydiota
Chlamydia suis [FTQR]
333593
333522
-
Gly
GCC
[ENA]
¡û
>W1910342244
FTQS01000001
Chlamydiota
Chlamydia suis [FTQS]
852375
852304
-
Gly
GCC
[ENA]
¡û
>W1910342318
FTQU01000001
Chlamydiota
Chlamydia suis [FTQU]
854669
854598
-
Gly
GCC
[ENA]
¡û
>W1910342355
FTQV01000001
Chlamydiota
Chlamydia suis [FTQV]
862721
862650
-
Gly
GCC
[ENA]
¡û
>C151104664
LN846995
Chlamydiota
Chlamydia pneumoniae [LN846995]
961249
961178
-
Gly
GCC
[Ensembl]
¡û
>C151104702
LN846996
Chlamydiota
Chlamydia pneumoniae [LN846996]
961153
961082
-
Gly
GCC
[Ensembl]
¡û
>C151104778
LN847221
Chlamydiota
Chlamydia pneumoniae [LN847221]
961553
961482
-
Gly
GCC
[Ensembl]
¡û
>C151104816
LN847257
Chlamydiota
Chlamydia pneumoniae [LN847257]
961603
961532
-
Gly
GCC
[Ensembl]
¡û
>C10103798
CP001713
Chlamydiota
Chlamydia pneumoniae LPCoLN [CP001713]
1121820
1121891
+
Gly
GCC
[Ensembl]
¡û
>C161074904
CP014639
Chlamydiota
Candidatus Chlamydia sanziniae 2742-308 [CP014639]
516044
515973
-
Gly
GCC
[Ensembl]
¡û
>C161106407
LN847241
Chlamydiota
Chlamydia pneumoniae [LN847241]
961156
961085
-
Gly
GCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK