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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.444650 (7 seq.)
>C024586
AP006840
Bacillota
Symbiobacterium thermophilum IAM 14863 IAM14863 [AP006840]
1949484
1949558
+
Val
CAC
[Ensembl]
¡û
>C024590
AP006840
Bacillota
Symbiobacterium thermophilum IAM 14863 IAM14863 [AP006840]
3464738
3464664
-
Val
CAC
[Ensembl]
¡û
>C024616
AP006840
Bacillota
Symbiobacterium thermophilum IAM 14863 IAM14863 [AP006840]
2661003
2660929
-
Val
CAC
[Ensembl]
¡û
>WENV170575161
FLYN01038228
[FLYN] hot springs metagenome; Sediment
314
240
-
Val
CAC
[ENA]
¢þ
>C181109272
CP024955
Bacillota
Kyrpidia spormannii EA-1 [CP024955]
3327601
3327527
-
Val
CAC
-
¡û
>C10102422
CP002017
Bacillota
Kyrpidia tusciae DSM 2912 [CP002017]
3362078
3362004
-
Val
CAC
[Ensembl]
¡û
>WENV070382
AACY023807220
Marine microbial communities from Global Ocean Sampling (GOS)
558
634
+
Val
CAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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