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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.445832 (18 seq.)
>W131231681
AUIQ01000081
Bacillota
Tetragenococcus muriaticus DSM 15685 [AUIQ]
4565
4494
-
Gly
GCC
[ENA]
¡û
>WENV180620722
OCQB01276669
[OCQB] human gut metagenome; human gut
136
64
-
Gly
GCC
[ENA]
¢þ
>WENV181404141
OGBZ01001621
[OGBZ] sediment metagenome; hot spring sediment
182
108
-
Gly
GCC
[ENA]
¢þ
>WENV170542917
CXQK01003153
[CXQK] human gut metagenome genome assembly hC5, contig hC5_contig005179.; ENVO:feces
5640
5711
+
Gly
GCC
[ENA]
¢þ
>C191055630
CP027768
Bacillota
Tetragenococcus halophilus LMG 26042 [CP027768]
300219
300148
-
Gly
GCC
-
¡û
>C191055639
CP027768
Bacillota
Tetragenococcus halophilus LMG 26042 [CP027768]
224022
223951
-
Gly
GCC
-
¡û
>C191055699
CP027783
Bacillota
Tetragenococcus osmophilus JCM 31126 [CP027783]
969573
969644
+
Gly
GCC
-
¡û
>C191055708
CP027783
Bacillota
Tetragenococcus osmophilus JCM 31126 [CP027783]
1047328
1047399
+
Gly
GCC
-
¡û
>W1910007352
BDDY01000093
Bacillota
Tetragenococcus halophilus subsp. halophilus NRIC 0098 [BDDY]
423
494
+
Gly
GCC
[ENA]
¡û
>W1910007455
BDEA01000082
Bacillota
Tetragenococcus halophilus subsp. flandriensis DSM 23766 [BDEA]
411
482
+
Gly
GCC
[ENA]
¡û
>W1910007672
BDEE01000199
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
411
482
+
Gly
GCC
[ENA]
¡û
>W1910007703
BDEF01000151
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7126 [BDEF]
344
273
-
Gly
GCC
[ENA]
¡û
>W1910007868
BDEI01000106
Bacillota
Tetragenococcus halophilus subsp. halophilus D-86 [BDEI]
423
494
+
Gly
GCC
[ENA]
¡û
>W1911577457
PDOE01000014
Bacillota
Salipaludibacillus neizhouensis KCTC 13187 [PDOE]
1600
1674
+
Gly
GCC
[ENA]
¡û
>W1911640664
PXYA01000002
Bacillota
Tetragenococcus halophilus subsp. halophilus DSM 20339 [PXYA]
635205
635276
+
Gly
GCC
[ENA]
¡û
>W1911640673
PXYA01000002
Bacillota
Tetragenococcus halophilus subsp. halophilus DSM 20339 [PXYA]
714712
714783
+
Gly
GCC
[ENA]
¡û
>C121000358
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2524335
2524264
-
Gly
GCC
[Ensembl]
¡û
>C121000367
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2441419
2441348
-
Gly
GCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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