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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448060 (60 seq.)
>W131237221
AUNO01000276
Bacteroidota
Chitinophaga sp. JGI 0001002-D04 [AUNO]
30781
30708
-
Gln
CTG
[ENA]
¡û
>W1711510295
MLAV01000022
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
44114
44041
-
Gln
CTG
[ENA]
¡û
>WENV180022865
FTGY01000225
[FTGY] metagenome; soil
2103
2031
-
Gln
CTG
[ENA]
¡û
>WENV180027241
FTIX01008225
[FTIX] metagenome; soil
813
742
-
Gln
CTG
[ENA]
¡û
>WENV181307968
OFIS01000064
[OFIS] sludge metagenome; sludge
72358
72287
-
Gln
CTG
[ENA]
¡û
>WENV181308359
OFIS01007332
[OFIS] sludge metagenome; sludge
1
72
+
Gln
CTG
[ENA]
¡û
>WENV181402157
OFTY01000164
[OFTY] sludge metagenome; sludge
6189
6118
-
Gln
CTG
[ENA]
¡û
>WENV181402597
OFTY01006848
[OFTY] sludge metagenome; sludge
225
154
-
Gln
CTG
[ENA]
¡û
>W09108580
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
2214646
2214719
+
Gln
CTG
[ENA]
¡û
>W1910805087
MTKN01000006
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
174815
174744
-
Gln
CTG
[ENA]
¡û
>W1911775066
QXMH01000002
Bacteroidota
Chitinophaga sp. T22 [QXMH]
420207
420281
+
Gln
CTG
[ENA]
¡û
>W1810393032
PYAW01000002
Bacteroidota
Chitinophaga niastensis DSM 24859 [PYAW]
422441
422512
+
Gln
CTG
[ENA]
¡û
>W1810400833
PYGK01000006
Bacteroidota
Chitinophaga ginsengisoli DSM 18107 [PYGK]
128143
128072
-
Gln
CTG
[ENA]
¡û
>W1810586461
QFFJ01000002
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
438567
438638
+
Gln
CTG
[ENA]
¡û
>W1810694428
QLMA01000001
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
438069
438140
+
Gln
CTG
[ENA]
¡û
>W1810695378
QLNL01000002
Bacteroidota
Chitinophaga ginsengisegetis 28_1 [QLNL]
709407
709478
+
Gln
CTG
[ENA]
¡û
>W1810721935
QNTR01000002
Bacteroidota
Chitinophaga arvensicola 10_5 24_1 [QNTR]
709512
709583
+
Gln
CTG
[ENA]
¡û
>W1810858514
QTJV01000001
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
360338
360264
-
Gln
CTG
[ENA]
¡û
>W2010169492
CABFVU010000002
Bacteroidota
Chitinophaga polysaccharea CSUR P9684 [CABFVU]
785512
785441
-
Gln
CTG
[ENA]
¡û
>W2010213349
CABHMS010000005
Bacteroidota
Chitinophaga sp. BD 01 [CABHMS]
379060
379131
+
Gln
CTG
[ENA]
¡û
>W2010213409
CABHMT010000007
Bacteroidota
Chitinophaga sp. VP 7442 [CABHMT]
128807
128878
+
Gln
CTG
[ENA]
¡û
>W2010445837
JAABOK010000005
Bacteroidota
Chitinophaga sp. O9 [JAABOK]
382883
382954
+
Gln
CTG
[ENA]
¡û
>W2010586291
JABAOB010000007
Bacteroidota
Chitinophaga sp. Ak27 [JABAOB]
373630
373559
-
Gln
CTG
[ENA]
¡û
>W2010714011
JACHVO010000001
Bacteroidota
Chitinophaga sancti 1232 [JACHVO]
360058
359987
-
Gln
CTG
[ENA]
¡û
>W2010912799
MTKN01000006
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
174815
174744
-
Gln
CTG
[ENA]
¡û
>W2011328623
QXMH01000002
Bacteroidota
Chitinophaga sp. T22 [QXMH]
420207
420281
+
Gln
CTG
[ENA]
¡û
>W2011429040
RIAR02000001
Bacteroidota
Chitinophaga sp. Mgbs1 [RIAR]
6947796
6947867
+
Gln
CTG
[ENA]
¡û
>W2011458263
RPDH01000002
Bacteroidota
Chitinophaga sp. ZY74 [RPDH]
2186438
2186367
-
Gln
CTG
[ENA]
¡û
>W2012047817
VIWA01000002
Bacteroidota
Chitinophaga pinensis 1204 [VIWA]
451202
451131
-
Gln
CTG
[ENA]
¡û
>W2012048646
VIWO01000007
Bacteroidota
Chitinophaga polysaccharea 1209 [VIWO]
263826
263897
+
Gln
CTG
[ENA]
¡û
>W2012082544
VLLG01000003
Bacteroidota
Chitinophaga japonensis DSM 13484 [VLLG]
558576
558647
+
Gln
CTG
[ENA]
¡û
>W2012103442
VOHS01000005
Bacteroidota
Chitinophaga pinensis YS-16 [VOHS]
60037
60108
+
Gln
CTG
[ENA]
¡û
>W2012156580
VUOC01000003
Bacteroidota
Chitinophaga sp. BN140078 [VUOC]
555947
556018
+
Gln
CTG
[ENA]
¡û
>W2012426544
WRXN01000027
Bacteroidota
Chitinophaga sp. ysch24 [WRXN]
279
208
-
Gln
CTG
[ENA]
¡û
>W2012426567
WRXO01000002
Bacteroidota
Chitinophaga oryziterrae JCM 16595 [WRXO]
393026
392955
-
Gln
CTG
[ENA]
¡û
>W2110269526
JACVFC010000006
Bacteroidota
Chitinophaga qingshengii JCM 30026 [JACVFC]
1845
1774
-
Gln
CTG
[ENA]
¡û
>W2110426530
JAELUL010000053
Bacteroidota
Chitinophaga sp. ASV3 [JAELUL]
19638
19709
+
Gln
CTG
[ENA]
¡û
>W2110546648
JAGHKP010000001
Bacteroidota
Chitinophaga chungangae MAH-28 [JAGHKP]
468547
468476
-
Gln
CTG
[ENA]
¡û
>W2110580057
JAGXJN010000065
Bacteroidota
Chitinophaga sp. GbtcB8 [JAGXJN]
2161
2090
-
Gln
CTG
[ENA]
¡û
>W2110668877
JAICCF010000001
Bacteroidota
Chitinophaga sp. B61 [JAICCF]
2001401
2001472
+
Gln
CTG
[ENA]
¡û
>C211325035
CP073766
Bacteroidota
Chitinophaga sp. KRA15-503 [CP073766]
3973364
3973293
-
Gln
CTG
-
¡û
>C231156284
CP077769
Bacteroidota
Chitinophaga sp. MD30B [CP077769]
4992640
4992569
-
Gln
CTG
-
¡û
>C231364562
CP095855
Bacteroidota
Chitinophaga filiformis YT5 [CP095855]
2129507
2129436
-
Gln
CTG
-
¡û
>C241149382
CP051205
Bacteroidota
Chitinophaga oryzae 1310 [CP051205]
5286060
5285989
-
Gln
CTG
-
¡û
>C241281589
CP128362
Bacteroidota
Chitinophaga sp. LS1 [CP128362]
3188422
3188351
-
Gln
CTG
-
¡û
>C241352873
CP139972
Bacteroidota
Chitinophaga sancti HAMBI_1988 [CP139972]
6739021
6738950
-
Gln
CTG
-
¡û
>C241354789
CP140154
Bacteroidota
Chitinophaga sancti ATCC 23090 [CP140154]
4096307
4096378
+
Gln
CTG
-
¡û
>C10103766
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
2142831
2142758
-
Gln
CTG
[Ensembl]
¡û
>W1610617815
LGYU01000027
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
37441
37368
-
Gln
CTG
[ENA]
¡û
>W1710515141
FNBN01000006
Bacteroidota
Chitinophaga filiformis [FNBN]
48205
48278
+
Gln
CTG
[ENA]
¡û
>W1710533856
FNRL01000005
Bacteroidota
Chitinophaga terrae (ex Kim and Jung 2007) Kim and Jung 2007 [FNRL]
142904
142831
-
Gln
CTG
[ENA]
¡û
>W1710533858
FNRL01000005
Bacteroidota
Chitinophaga terrae (ex Kim and Jung 2007) Kim and Jung 2007 [FNRL]
108007
107934
-
Gln
CTG
[ENA]
¡û
>W1710544836
FOBB01000012
Bacteroidota
Chitinophaga rupis [FOBB]
122753
122680
-
Gln
CTG
[ENA]
¡û
>W1710555249
FOJF01000001
Bacteroidota
Chitinophaga sp. YR573 [FOJF]
3768435
3768364
-
Gln
CTG
[ENA]
¡û
>W1710555309
FOJG01000002
Bacteroidota
Chitinophaga arvensicola [FOJG]
3465891
3465964
+
Gln
CTG
[ENA]
¡û
>W1710559151
FOMK01000013
Bacteroidota
Chitinophaga sp. CF118 [FOMK]
160846
160773
-
Gln
CTG
[ENA]
¡û
>W1710570068
FOUX01000002
Bacteroidota
Chitinophaga sp. YR627 [FOUX]
1266932
1267005
+
Gln
CTG
[ENA]
¡û
>W1710579991
FPIZ01000006
Bacteroidota
Chitinophaga sancti [FPIZ]
372002
372075
+
Gln
CTG
[ENA]
¡û
>W1710604514
FUZZ01000002
Bacteroidota
Chitinophaga ginsengisegetis [FUZZ]
700963
701036
+
Gln
CTG
[ENA]
¡û
>W1710743868
LGYU01000027
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
37441
37368
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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