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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448086 (125 seq.)
>W1710785113
LJHO01000016
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
50513
50440
-
Gln
CTG
[ENA]
¡û
>W1710927032
LOEX01000114
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
385
312
-
Gln
CTG
[ENA]
¡û
>W131104484
APCQ01000695
Alphaproteobacteria
Novosphingobium sp. B-7 [APCQ]
16891
16818
-
Gln
CTG
[ENA]
¡û
>W1711434803
MINO01000005
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
10506
10433
-
Gln
CTG
[ENA]
¡û
>W1711437783
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
4434886
4434959
+
Gln
CTG
[ENA]
¡û
>W1711506364
MKWI01000018
Alphaproteobacteria
Sphingobium sp. 66-54 [MKWI]
103797
103870
+
Gln
CTG
[ENA]
¡û
>W1712049903
NFUS01000004
Alphaproteobacteria
Sphingomonas sp. IBVSS1 [NFUS]
117575
117502
-
Gln
CTG
[ENA]
¡û
>WENV180020620
FTCZ01007501
[FTCZ] metagenome; soil
2700
2773
+
Gln
CTG
[ENA]
¡û
>WENV180292555
OBIV01505895
[OBIV] soil metagenome; Clay
112
185
+
Gln
CTG
[ENA]
¡û
>WENV180298803
OBJA01630429
[OBJA] soil metagenome; sediment, water from around vicinity
34
107
+
Gln
CTG
[ENA]
¡û
>WENV181165412
OEIR01806067
[OEIR] soil metagenome; soil
75
148
+
Gln
CTG
[ENA]
¡û
>WENV181168454
OEIU01372146
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
275
202
-
Gln
CTG
[ENA]
¡û
>W141223025
BACX01000150
Alphaproteobacteria
Sphingomonas-like bacterium B12 [BACX]
4145
4072
-
Gln
CTG
[ENA]
¡û
>W141230389
BASZ01000005
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
144150
144223
+
Gln
CTG
[ENA]
¡û
>WENV183665255
ORJL010452458
[ORJL] groundwater metagenome; groundwater
642
715
+
Gln
CTG
[ENA]
¡û
>WENV183679376
ORMF010053952
[ORMF] groundwater metagenome; groundwater
396
469
+
Gln
CTG
[ENA]
¡û
>WENV183724417
PJQE01012722
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
1236
1163
-
Gln
CTG
[ENA]
¡û
>WENV183730370
PJTS01000001
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
404340
404413
+
Gln
CTG
[ENA]
¡û
>WENV183731498
PJTT01000009
[PJTT] soil metagenome; Soil (2) enriched on wood chips
453203
453130
-
Gln
CTG
[ENA]
¡û
>WENV183731553
PJTT01000020
[PJTT] soil metagenome; Soil (2) enriched on wood chips
161131
161058
-
Gln
CTG
[ENA]
¡û
>WENV183732985
PJTY01000012
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
139671
139598
-
Gln
CTG
[ENA]
¡û
>WENV183733999
PJTZ01000015
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
139671
139598
-
Gln
CTG
[ENA]
¡û
>WENV183738710
PJUE01000120
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
59088
59161
+
Gln
CTG
[ENA]
¡û
>WENV183746528
POYD01052501
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
1
74
+
Gln
CTG
[ENA]
¡û
>WENV170003437
AGTN01333537
[AGTN] bioreactor metagenome; poplar biomass
197
124
-
Gln
CTG
[ENA]
¡û
>WENV171003494
NNBU01000197
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
16841
16768
-
Gln
CTG
[ENA]
¡û
>WENV171003932
NNBV01004676
[NNBV] plant metagenome; symbiotic tissue sample KVS11
181589
181662
+
Gln
CTG
[ENA]
¡û
>C191002581
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
3793140
3793067
-
Gln
CTG
-
¡û
>C191121061
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
2565589
2565662
+
Gln
CTG
-
¡û
>C191155737
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
95243
95316
+
Gln
CTG
-
¡û
>W141564478
JIAU01000006
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
329897
329970
+
Gln
CTG
[ENA]
¡û
>W1910548718
FZOS01000008
Alphaproteobacteria
Sphingomonas laterariae LNB2 [FZOS]
25681
25754
+
Gln
CTG
[ENA]
¡û
>W1910727964
MGVU01000503
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
12159
12086
-
Gln
CTG
[ENA]
¡û
>W1910822162
MWMO01000011
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
42524
42451
-
Gln
CTG
[ENA]
¡û
>W1911391073
NWBU01000015
Alphaproteobacteria
Sphingomonas sp. FW-11 [NWBU]
7553
7480
-
Gln
CTG
[ENA]
¡û
>W1911802713
QYUM01000004
Alphaproteobacteria
Sphingomonas sp. K2R01-6 [QYUM]
782921
782994
+
Gln
CTG
[ENA]
¡û
>W1911823511
QZVQ01000006
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
255401
255474
+
Gln
CTG
[ENA]
¡û
>W1810109400
PHHF01000047
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
22891
22818
-
Gln
CTG
[ENA]
¡û
>W1810463748
PZZU01000022
Alphaproteobacteria
Novosphingobium sp. GV064 [PZZU]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W1810477339
QAOS01000022
Alphaproteobacteria
Novosphingobium sp. GV055 [QAOS]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W1810513893
QBUA01000022
Alphaproteobacteria
Novosphingobium sp. GV061 [QBUA]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W1810514106
QBUE01000022
Alphaproteobacteria
Novosphingobium sp. GV079 [QBUE]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W1810514315
QBUI01000022
Alphaproteobacteria
Novosphingobium sp. GV027 [QBUI]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W1810677143
QKMM01000016
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
58676
58603
-
Gln
CTG
[ENA]
¡û
>W2010430479
FZOS01000008
Alphaproteobacteria
Sphingomonas laterariae LNB2 [FZOS]
25681
25754
+
Gln
CTG
[ENA]
¡û
>W2010587734
JABBHN010000015
Alphaproteobacteria
Novosphingobium sp. SG781 [JABBHN]
12664
12737
+
Gln
CTG
[ENA]
¡û
>W2010593133
JABEPR010000007
Alphaproteobacteria
Sphingomonas sp. ID1715 [JABEPR]
2704
2777
+
Gln
CTG
[ENA]
¡û
>W2010602328
JABGBY010000010
Alphaproteobacteria
Novosphingobium sp. SG486 [JABGBY]
66534
66461
-
Gln
CTG
[ENA]
¡û
>W2010602385
JABGBZ010000011
Alphaproteobacteria
Novosphingobium sp. SG619 [JABGBZ]
61567
61640
+
Gln
CTG
[ENA]
¡û
>W2010602448
JABGCA010000007
Alphaproteobacteria
Novosphingobium sp. SG718 [JABGCA]
18035
18108
+
Gln
CTG
[ENA]
¡û
>W2010602552
JABGCC010000011
Alphaproteobacteria
Novosphingobium sp. SG754 [JABGCC]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010669631
JACCAM010000001
Alphaproteobacteria
Sphingomonas sp. R3G8B [JACCAM]
3099931
3100004
+
Gln
CTG
[ENA]
¡û
>W2010669907
JACCAQ010000001
Alphaproteobacteria
Sphingomonas sp. R3G8C [JACCAQ]
3627146
3627073
-
Gln
CTG
[ENA]
¡û
>W2010675579
JACCGC010000001
Alphaproteobacteria
Novosphingobium sp. R1F6A [JACCGC]
2803796
2803869
+
Gln
CTG
[ENA]
¡û
>W2010675626
JACCGD010000001
Alphaproteobacteria
Novosphingobium sp. R1F6D [JACCGD]
783234
783307
+
Gln
CTG
[ENA]
¡û
>W2010679893
JACDUG010000001
Alphaproteobacteria
Sphingobium sp. B10D3C [JACDUG]
3461461
3461534
+
Gln
CTG
[ENA]
¡û
>W2010682063
JACEIA010000009
Alphaproteobacteria
Sphingomonas sp. CGMCC 1.13658 [JACEIA]
442
369
-
Gln
CTG
[ENA]
¡û
>W2010694502
JACHBM010000001
Alphaproteobacteria
Sphingomonas sp. R3G7C [JACHBM]
3828518
3828591
+
Gln
CTG
[ENA]
¡û
>W2010697862
JACHDU010000001
Alphaproteobacteria
Novosphingobium sp. R1F5D [JACHDU]
917644
917571
-
Gln
CTG
[ENA]
¡û
>W2010697918
JACHDV010000001
Alphaproteobacteria
Novosphingobium sp. R1F9B1 [JACHDV]
1361599
1361526
-
Gln
CTG
[ENA]
¡û
>W2010697971
JACHDW010000001
Alphaproteobacteria
Sphingobium sp. B10D3D [JACHDW]
209996
209923
-
Gln
CTG
[ENA]
¡û
>W2010697989
JACHDX010000001
Alphaproteobacteria
Sphingobium sp. B10D7A [JACHDX]
1757179
1757252
+
Gln
CTG
[ENA]
¡û
>W2010713029
JACHOV010000009
Alphaproteobacteria
Rhizorhapis suberifaciens DSM 7465 [JACHOV]
235
308
+
Gln
CTG
[ENA]
¡û
>W2010719207
JACHZI010000011
Alphaproteobacteria
Novosphingobium sp. BK256 [JACHZI]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010719262
JACHZJ010000011
Alphaproteobacteria
Novosphingobium sp. BK258 [JACHZJ]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010719314
JACHZK010000011
Alphaproteobacteria
Novosphingobium sp. BK267 [JACHZK]
40430
40503
+
Gln
CTG
[ENA]
¡û
>W2010719418
JACHZM010000011
Alphaproteobacteria
Novosphingobium sp. BK280 [JACHZM]
40430
40503
+
Gln
CTG
[ENA]
¡û
>W2010719801
JACHZU010000011
Alphaproteobacteria
Novosphingobium sp. BK369 [JACHZU]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010719856
JACHZV010000011
Alphaproteobacteria
Novosphingobium sp. BK336 [JACHZV]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010720051
JACHZZ010000011
Alphaproteobacteria
Novosphingobium sp. BK349 [JACHZZ]
40430
40503
+
Gln
CTG
[ENA]
¡û
>W2010720108
JACIAA010000012
Alphaproteobacteria
Novosphingobium sp. BK352 [JACIAA]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010720163
JACIAB010000011
Alphaproteobacteria
Novosphingobium sp. BK361 [JACIAB]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010720502
JACIAI010000011
Alphaproteobacteria
Novosphingobium sp. BK401 [JACIAI]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010720557
JACIAJ010000011
Alphaproteobacteria
Novosphingobium sp. BK409 [JACIAJ]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010720612
JACIAK010000011
Alphaproteobacteria
Novosphingobium sp. BK430 [JACIAK]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010720667
JACIAL010000011
Alphaproteobacteria
Novosphingobium sp. BK431 [JACIAL]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010720722
JACIAM010000011
Alphaproteobacteria
Novosphingobium sp. BK448 [JACIAM]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010720775
JACIAN010000011
Alphaproteobacteria
Novosphingobium sp. BK455 [JACIAN]
40430
40503
+
Gln
CTG
[ENA]
¡û
>W2010720927
JACIAQ010000011
Alphaproteobacteria
Novosphingobium sp. BK486 [JACIAQ]
40430
40503
+
Gln
CTG
[ENA]
¡û
>W2010721177
JACIAV010000011
Alphaproteobacteria
Novosphingobium sp. BK540 [JACIAV]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010721420
JACIBA010000011
Alphaproteobacteria
Novosphingobium sp. BK592 [JACIBA]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010721807
JACIBI010000011
Alphaproteobacteria
Novosphingobium sp. BK626 [JACIBI]
40430
40503
+
Gln
CTG
[ENA]
¡û
>W2010721957
JACIBL010000011
Alphaproteobacteria
Novosphingobium sp. BK657 [JACIBL]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010722053
JACIBN010000011
Alphaproteobacteria
Novosphingobium sp. BK679 [JACIBN]
40430
40503
+
Gln
CTG
[ENA]
¡û
>W2010722254
JACIBR010000011
Alphaproteobacteria
Novosphingobium sp. BK727 [JACIBR]
50640
50567
-
Gln
CTG
[ENA]
¡û
>W2010724958
JACIDT010000003
Alphaproteobacteria
Sphingobium jiangsuense DSM 26189 [JACIDT]
170418
170345
-
Gln
CTG
[ENA]
¡û
>W2010745994
JACLAU010000006
Alphaproteobacteria
Novosphingobium flavum 4Y4 [JACLAU]
127392
127319
-
Gln
CTG
[ENA]
¡û
>W2010746034
JACLAV010000006
Alphaproteobacteria
Novosphingobium flavum 4Y9 [JACLAV]
43992
44065
+
Gln
CTG
[ENA]
¡û
>W2010746077
JACLAW010000002
Alphaproteobacteria
Novosphingobium flavum NBRC 111647 [JACLAW]
60882
60809
-
Gln
CTG
[ENA]
¡û
>W2010746148
JACLAX010000010
Alphaproteobacteria
Novosphingobium piscinae KCTC 42194 [JACLAX]
60881
60808
-
Gln
CTG
[ENA]
¡û
>W2010861392
MGVU01000503
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
12159
12086
-
Gln
CTG
[ENA]
¡û
>W2010918584
MWMO01000011
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
42524
42451
-
Gln
CTG
[ENA]
¡û
>W2011344344
QYUM01000004
Alphaproteobacteria
Sphingomonas sp. K2R01-6 [QYUM]
782921
782994
+
Gln
CTG
[ENA]
¡û
>W2011350501
QZVQ01000006
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
255401
255474
+
Gln
CTG
[ENA]
¡û
>W2011532263
SBKP01000001
Alphaproteobacteria
Sphingobium sp. CHR27 [SBKP]
263471
263544
+
Gln
CTG
[ENA]
¡û
>W2011652486
SNZT01000022
Alphaproteobacteria
Novosphingobium sp. GV022 [SNZT]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W2011652546
SNZU01000022
Alphaproteobacteria
Novosphingobium sp. GV070 [SNZU]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W2011652942
SOAC01000022
Alphaproteobacteria
Novosphingobium sp. GV076 [SOAC]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W2011653002
SOAD01000022
Alphaproteobacteria
Novosphingobium sp. GV011 [SOAD]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W2011653062
SOAE01000023
Alphaproteobacteria
Novosphingobium sp. GV026 [SOAE]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W2011653122
SOAF01000022
Alphaproteobacteria
Novosphingobium sp. GV078 [SOAF]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W2011653413
SOAK01000022
Alphaproteobacteria
Novosphingobium sp. GV057 [SOAK]
5724
5797
+
Gln
CTG
[ENA]
¡û
>W2012378313
WMHO01000084
Alphaproteobacteria
Sandarakinorhabdus sp. MO-4 [WMHO]
9298
9225
-
Gln
CTG
[ENA]
¡û
>W2012425081
WQMS01000007
Alphaproteobacteria
Sphingomonas sp. MAH-20 [WQMS]
442
369
-
Gln
CTG
[ENA]
¡û
>W2012425996
WRPK01000001
Alphaproteobacteria
Sphingomonas formosensis CC-Nfb-2 [WRPK]
853230
853303
+
Gln
CTG
[ENA]
¡û
>W2012426137
WRPO01000011
Alphaproteobacteria
Novosphingobium sp. M24A2M [WRPO]
102593
102666
+
Gln
CTG
[ENA]
¡û
>W2012438962
WTYJ01000001
Alphaproteobacteria
Altererythrobacter xixiisoli S36 [WTYJ]
560217
560290
+
Gln
CTG
[ENA]
¡û
>W2012439009
WTYK01000001
Alphaproteobacteria
Altererythrobacter soli MCCC 1K02066 [WTYK]
663622
663695
+
Gln
CTG
[ENA]
¡û
>W2110029021
BMKL01000001
Alphaproteobacteria
Altererythrobacter deserti CGMCC 1.15959 [BMKL]
2008689
2008616
-
Gln
CTG
[ENA]
¡û
>W2110050653
BMZP01000023
Alphaproteobacteria
Novosphingobium pokkalii KCTC 42224 [BMZP]
12699
12772
+
Gln
CTG
[ENA]
¡û
>W2110613859
JAHKRT010000009
Alphaproteobacteria
Sphingomonas sp. XMGL2 [JAHKRT]
39181
39108
-
Gln
CTG
[ENA]
¡û
>W2110689720
JAINVV010000013
Alphaproteobacteria
Sphingomonas colocasiae JCM 31229 [JAINVV]
269135
269062
-
Gln
CTG
[ENA]
¡û
>C211327509
CP073910
Alphaproteobacteria
Sphingobium phenoxybenzoativorans Tas13 [CP073910]
3413207
3413134
-
Gln
CTG
-
¡û
>C211388304
CP081844
Alphaproteobacteria
Caenibius sp. WL [CP081844]
3405275
3405202
-
Gln
CTG
-
¡û
>W1510019430
BBWU01000045
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
112138
112211
+
Gln
CTG
[ENA]
¡û
>C231317759
CP092471
Alphaproteobacteria
Qipengyuania sp. PHS-Z21 [CP092471]
2837595
2837522
-
Gln
CTG
-
¡û
>C241353546
CP140000
Alphaproteobacteria
Novosphingobium capsulatum HAMBI_0103 [CP140000]
707278
707205
-
Gln
CTG
-
¡û
>W2310026695
BSPS01000077
Alphaproteobacteria
Sphingobium jiangsuense NBRC 112973 [BSPS]
12257
12184
-
Gln
CTG
[ENA]
¡û
>W1610071172
BCTW01000002
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
33608
33535
-
Gln
CTG
[ENA]
¡û
>W1610076579
BCYV01000024
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
50469
50396
-
Gln
CTG
[ENA]
¡û
>C131011849
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
1940867
1940940
+
Gln
CTG
[Ensembl]
¡û
>W1610648919
LJHO01000016
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
50513
50440
-
Gln
CTG
[ENA]
¡û
>W1610784574
LOEX01000114
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
385
312
-
Gln
CTG
[ENA]
¡û
>W1710068537
BCTW01000002
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
33608
33535
-
Gln
CTG
[ENA]
¡û
>W1710074268
BCYV01000024
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
50469
50396
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
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End
Direction
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Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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