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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448168 (136 seq.)
>W1710860153
LMCQ01000023
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
234880
234953
+
Cys
GCA
[ENA]
¡û
>W1710861771
LMDW01000016
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
736915
736842
-
Cys
GCA
[ENA]
¡û
>W1711395012
MESQ01000053
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
50479
50406
-
Cys
GCA
[ENA]
¡û
>W1711395025
MESQ01000085
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
74
1
-
Cys
GCA
[ENA]
¡û
>W1711395041
MESR01000331
Betaproteobacteria
Burkholderiales bacterium RIFOXYD2_FULL_59_8 [MESR]
6501
6428
-
Cys
GCA
[ENA]
¡û
>W1711421874
MIAF01000436
Betaproteobacteria
Sideroxydans sp. RIFOXYD2_FULL_59_7 [MIAF]
2354
2427
+
Cys
GCA
[ENA]
¡û
>W1711583948
MNXW01000029
Betaproteobacteria
Comamonadaceae bacterium CG2_30_57_122 [MNXW]
22248
22321
+
Cys
GCA
[ENA]
¡û
>W1711583987
MNXX01000079
Betaproteobacteria
Comamonadaceae bacterium CG2_30_59_20 [MNXX]
16598
16671
+
Cys
GCA
[ENA]
¡û
>W1711709057
MSYM01000013
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
636882
636955
+
Cys
GCA
[ENA]
¡û
>W1711721738
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
422451
422378
-
Cys
GCA
[ENA]
¡û
>C171091720
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
1465996
1466069
+
Cys
GCA
-
¡û
>C018598
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
1681552
1681625
+
Cys
GCA
[Ensembl]
¡û
>WENV180016527
FSVG01001828
[FSVG] metagenome; soil
6537
6464
-
Cys
GCA
[ENA]
¡û
>WENV180016948
FSWG01000203
[FSWG] metagenome; soil
25
98
+
Cys
GCA
[ENA]
¡û
>WENV180017734
FSXQ01000426
[FSXQ] metagenome; soil
3924
3851
-
Cys
GCA
[ENA]
¡û
>WENV180017831
FSXQ01003934
[FSXQ] metagenome; soil
4646
4573
-
Cys
GCA
[ENA]
¡û
>WENV180017841
FSXQ01004241
[FSXQ] metagenome; soil
5
78
+
Cys
GCA
[ENA]
¡û
>WENV180017850
FSXQ01004710
[FSXQ] metagenome; soil
10155
10082
-
Cys
GCA
[ENA]
¡û
>WENV180019384
FTBV01000501
[FTBV] metagenome; soil
3088
3015
-
Cys
GCA
[ENA]
¡û
>WENV180020881
FTDG01000746
[FTDG] metagenome; soil
4533
4460
-
Cys
GCA
[ENA]
¡û
>WENV180023811
FTIF01000726
[FTIF] metagenome; soil
12759
12686
-
Cys
GCA
[ENA]
¡û
>WENV180023831
FTIF01001153
[FTIF] metagenome; soil
27
100
+
Cys
GCA
[ENA]
¡û
>WENV180023913
FTIF01003845
[FTIF] metagenome; soil
2306
2379
+
Cys
GCA
[ENA]
¡û
>WENV180024150
FTIF01086976
[FTIF] metagenome; soil
613
540
-
Cys
GCA
[ENA]
¡û
>WENV180024318
FTIG01091139
[FTIG] metagenome; soil
335
262
-
Cys
GCA
[ENA]
¡û
>WENV180025394
FTIP01001122
[FTIP] metagenome; soil
121
194
+
Cys
GCA
[ENA]
¡û
>WENV180025458
FTIP01006710
[FTIP] metagenome; soil
654
581
-
Cys
GCA
[ENA]
¡û
>WENV180025494
FTIP01022071
[FTIP] metagenome; soil
218
291
+
Cys
GCA
[ENA]
¡û
>WENV180025517
FTIP01029380
[FTIP] metagenome; soil
4491
4418
-
Cys
GCA
[ENA]
¡û
>WENV180025520
FTIP01030684
[FTIP] metagenome; soil
1
74
+
Cys
GCA
[ENA]
¡û
>WENV180025550
FTIP01051368
[FTIP] metagenome; soil
7194
7121
-
Cys
GCA
[ENA]
¡û
>WENV180025633
FTIP01204395
[FTIP] metagenome; soil
431
358
-
Cys
GCA
[ENA]
¡û
>WENV180025945
FTIR01000536
[FTIR] metagenome; soil
2591
2518
-
Cys
GCA
[ENA]
¡û
>WENV180026023
FTIR01002571
[FTIR] metagenome; soil
8717
8644
-
Cys
GCA
[ENA]
¡û
>WENV180026047
FTIR01007469
[FTIR] metagenome; soil
121
194
+
Cys
GCA
[ENA]
¡û
>WENV180026093
FTIR01048273
[FTIR] metagenome; soil
253
326
+
Cys
GCA
[ENA]
¡û
>WENV180027855
FTIZ01169429
[FTIZ] metagenome; soil
1
74
+
Cys
GCA
[ENA]
¡û
>WENV180028828
FTJH01053510
[FTJH] metagenome; soil
2
75
+
Cys
GCA
[ENA]
¡û
>WENV180030605
FTJN01000837
[FTJN] metagenome; soil
49758
49831
+
Cys
GCA
[ENA]
¡û
>WENV180032750
FTKD01000397
[FTKD] metagenome; soil
10537
10464
-
Cys
GCA
[ENA]
¡û
>WENV180034065
FTKM01394384
[FTKM] metagenome; soil
822
895
+
Cys
GCA
[ENA]
¡û
>WENV180035015
FTKT01000135
[FTKT] metagenome; soil
213
286
+
Cys
GCA
[ENA]
¡û
>WENV180035247
FTKT01032651
[FTKT] metagenome; soil
679
606
-
Cys
GCA
[ENA]
¡û
>WENV180035281
FTKT01066513
[FTKT] metagenome; soil
4072
3999
-
Cys
GCA
[ENA]
¡û
>w008229
AAJK01000019
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
33908
33838
-
Cys
GCA
[ENA]
¡û
>WENV016822
AACY020470441
Marine microbial communities from Global Ocean Sampling (GOS)
101
174
+
Cys
GCA
[ENA]
>WENV180208671
OBAJ01017381
[OBAJ] marine metagenome; Coastal water
456
383
-
Cys
GCA
[ENA]
¡û
>WENV180208844
OBAJ01059879
[OBAJ] marine metagenome; Coastal water
326
253
-
Cys
GCA
[ENA]
¡û
>WENV180250131
OBEQ010258561
[OBEQ] groundwater metagenome; groundwater
235
162
-
Cys
GCA
[ENA]
¡û
>WENV180390973
OBPM01000211
[OBPM] marine metagenome; ENVO:00002010
6935
6862
-
Cys
GCA
[ENA]
¡û
>WENV180393676
OBPR01000948
[OBPR] marine metagenome; ENVO:00002042
1627
1554
-
Cys
GCA
[ENA]
¡û
>WENV180593967
OCOY01007264
[OCOY] marine metagenome; ENVO:00002010
145
218
+
Cys
GCA
[ENA]
¡û
>WENV181145130
OEHO01206971
[OEHO] metagenome; unknown
43
116
+
Cys
GCA
[ENA]
¡û
>WENV181163298
OEIO01204123
[OEIO] marine metagenome; sea ice
224
151
-
Cys
GCA
[ENA]
¡û
>WENV181188035
OEOE01015631
[OEOE] activated sludge metagenome; Activated Sludge
665
592
-
Cys
GCA
[ENA]
¡û
>WENV181189164
OEOF01004522
[OEOF] activated sludge metagenome; Activated Sludge
455
382
-
Cys
GCA
[ENA]
¡û
>WENV181365235
OFPM01000729
[OFPM] sediment metagenome; Lake sediment
578
651
+
Cys
GCA
[ENA]
¡û
>WENV181370456
OFQS01014790
[OFQS] freshwater metagenome; Freshwater Lake
549
622
+
Cys
GCA
[ENA]
¡û
>WENV181379333
OFRD01000574
[OFRD] wastewater metagenome; Exp Tend CN 100WW
136
209
+
Cys
GCA
[ENA]
¡û
>WENV181379487
OFRD01002254
[OFRD] wastewater metagenome; Exp Tend CN 100WW
180
253
+
Cys
GCA
[ENA]
¡û
>WENV181395856
OFSB01010779
[OFSB] freshwater metagenome; Freshwater Lake
123
196
+
Cys
GCA
[ENA]
¡û
>W141188706
AYMW01000001
Betaproteobacteria
Betaproteobacteria bacterium MOLA814 [AYMW]
486522
486449
-
Cys
GCA
[ENA]
¡û
>W141188707
AYMW01000001
Betaproteobacteria
Betaproteobacteria bacterium MOLA814 [AYMW]
477819
477746
-
Cys
GCA
[ENA]
¡û
>W141223640
BADL01000146
Betaproteobacteria
Ideonella sp. B508-1 [BADL]
20402
20329
-
Cys
GCA
[ENA]
¡û
>WENV183621203
OOFT01016728
[OOFT] marine metagenome; sea ice
636
563
-
Cys
GCA
[ENA]
¡û
>WENV183625798
OOGG01032529
[OOGG] marine metagenome; sea ice
366
439
+
Cys
GCA
[ENA]
¡û
>WENV183671097
ORJL011026447
[ORJL] groundwater metagenome; groundwater
499
572
+
Cys
GCA
[ENA]
¡û
>WENV183697197
OUNJ010059024
[OUNJ] metagenome; soil
728
655
-
Cys
GCA
[ENA]
¡û
>WENV170559798
CXWL01151318
[CXWL] groundwater metagenome; biofilm material
1086
1013
-
Cys
GCA
[ENA]
¡û
>WENV170609371
FUWD011384900
[FUWD] metagenome; unknown
228
155
-
Cys
GCA
[ENA]
¡û
>WENV170612914
FUWD012742619
[FUWD] metagenome; unknown
328
255
-
Cys
GCA
[ENA]
¡û
>WENV170622037
FUWD013084696
[FUWD] metagenome; unknown
1035
1108
+
Cys
GCA
[ENA]
¡û
>WENV170625789
FUWD013205768
[FUWD] metagenome; unknown
411
484
+
Cys
GCA
[ENA]
¡û
>WENV170625902
FUWD013209244
[FUWD] metagenome; unknown
3423
3350
-
Cys
GCA
[ENA]
¡û
>WENV170630238
FUWD013299670
[FUWD] metagenome; unknown
1035
1108
+
Cys
GCA
[ENA]
¡û
>WENV170634011
FUWD013407589
[FUWD] metagenome; unknown
411
484
+
Cys
GCA
[ENA]
¡û
>WENV170634118
FUWD013410768
[FUWD] metagenome; unknown
3423
3350
-
Cys
GCA
[ENA]
¡û
>WENV170639682
JFJP01005872
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5706
5633
-
Cys
GCA
[ENA]
¡û
>WENV170639695
JFJP01005958
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6763
6836
+
Cys
GCA
[ENA]
¡û
>WENV170639698
JFJP01005966
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1481
1408
-
Cys
GCA
[ENA]
¡û
>WENV170712838
LNFM01018684
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3779
3706
-
Cys
GCA
[ENA]
¡û
>WENV170948539
MEHZ011219717
[MEHZ] marine metagenome; marine surface water
126
53
-
Cys
GCA
[ENA]
¡û
>WENV170961938
MLJW01008579
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
258
331
+
Cys
GCA
[ENA]
¡û
>W1910744111
MHZY01000186
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
7763
7690
-
Cys
GCA
[ENA]
¡û
>W1910888436
NERU01000003
Betaproteobacteria
Limnohabitans sp. WS1 [NERU]
204333
204406
+
Cys
GCA
[ENA]
¡û
>W1910888536
NERW01000002
Betaproteobacteria
Limnohabitans sp. T6-20 [NERW]
766246
766319
+
Cys
GCA
[ENA]
¡û
>W1910888559
NERX01000001
Betaproteobacteria
Limnohabitans sp. MMS-10A-192 [NERX]
875934
875861
-
Cys
GCA
[ENA]
¡û
>W1910888649
NERZ01000002
Betaproteobacteria
Limnohabitans sp. MMS-10A-160 [NERZ]
558844
558771
-
Cys
GCA
[ENA]
¡û
>W1910888683
NESA01000001
Betaproteobacteria
Limnohabitans sp. JirII-31 [NESA]
246510
246583
+
Cys
GCA
[ENA]
¡û
>W1910888746
NESB01000006
Betaproteobacteria
Limnohabitans sp. JirII-29 [NESB]
301
228
-
Cys
GCA
[ENA]
¡û
>W1910888838
NESD01000004
Betaproteobacteria
Limnohabitans sp. Jir61 [NESD]
267368
267295
-
Cys
GCA
[ENA]
¡û
>W1910888882
NESF01000001
Betaproteobacteria
Limnohabitans sp. Hippo3 [NESF]
152862
152935
+
Cys
GCA
[ENA]
¡û
>W1910888936
NESG01000004
Betaproteobacteria
Limnohabitans sp. G3-2 [NESG]
216517
216590
+
Cys
GCA
[ENA]
¡û
>W1910889023
NESI01000003
Betaproteobacteria
Limnohabitans sp. B9-3 [NESI]
475940
476013
+
Cys
GCA
[ENA]
¡û
>W1910889056
NESJ01000003
Betaproteobacteria
Limnohabitans sp. 2KL-51 [NESJ]
249323
249250
-
Cys
GCA
[ENA]
¡û
>W1910889087
NESK01000001
Betaproteobacteria
Limnohabitans sp. 2KL-17 [NESK]
33704
33777
+
Cys
GCA
[ENA]
¡û
>W1910889152
NESL01000008
Betaproteobacteria
Limnohabitans sp. 2KL-1 [NESL]
74198
74271
+
Cys
GCA
[ENA]
¡û
>W1910889187
NESM01000002
Betaproteobacteria
Limnohabitans sp. 15K [NESM]
195895
195822
-
Cys
GCA
[ENA]
¡û
>W1910889228
NESN01000001
Betaproteobacteria
Limnohabitans parvus II-B4 [NESN]
278493
278420
-
Cys
GCA
[ENA]
¡û
>W1910889284
NESO01000006
Betaproteobacteria
Limnohabitans sp. Rim8 [NESO]
36089
36016
-
Cys
GCA
[ENA]
¡û
>W1910889328
NESP01000001
Betaproteobacteria
Limnohabitans curvus MWH-C5 [NESP]
381622
381549
-
Cys
GCA
[ENA]
¡û
>W1810570322
QEII01000290
Betaproteobacteria
Rhodoferax ferrireducens OTU1 [QEII]
179858
179931
+
Cys
GCA
[ENA]
¡û
>W2010640226
JABVZS010000018
Betaproteobacteria
Rhodoferax sp. 4810 [JABVZS]
53228
53155
-
Cys
GCA
[ENA]
¡û
>W2010877543
MHZY01000186
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
7763
7690
-
Cys
GCA
[ENA]
¡û
>W2010953294
NERU01000003
Betaproteobacteria
Limnohabitans sp. WS1 [NERU]
204333
204406
+
Cys
GCA
[ENA]
¡û
>W2010953394
NERW01000002
Betaproteobacteria
Limnohabitans sp. T6-20 [NERW]
766246
766319
+
Cys
GCA
[ENA]
¡û
>W2010953417
NERX01000001
Betaproteobacteria
Limnohabitans sp. MMS-10A-192 [NERX]
875934
875861
-
Cys
GCA
[ENA]
¡û
>W2010953507
NERZ01000002
Betaproteobacteria
Limnohabitans sp. MMS-10A-160 [NERZ]
558844
558771
-
Cys
GCA
[ENA]
¡û
>W2010953541
NESA01000001
Betaproteobacteria
Limnohabitans sp. JirII-31 [NESA]
246510
246583
+
Cys
GCA
[ENA]
¡û
>W2010953740
NESF01000001
Betaproteobacteria
Limnohabitans sp. Hippo3 [NESF]
152862
152935
+
Cys
GCA
[ENA]
¡û
>W2010953794
NESG01000004
Betaproteobacteria
Limnohabitans sp. G3-2 [NESG]
216517
216590
+
Cys
GCA
[ENA]
¡û
>W2010953881
NESI01000003
Betaproteobacteria
Limnohabitans sp. B9-3 [NESI]
475940
476013
+
Cys
GCA
[ENA]
¡û
>W2010953945
NESK01000001
Betaproteobacteria
Limnohabitans sp. 2KL-17 [NESK]
33704
33777
+
Cys
GCA
[ENA]
¡û
>W2010954010
NESL01000008
Betaproteobacteria
Limnohabitans sp. 2KL-1 [NESL]
74198
74271
+
Cys
GCA
[ENA]
¡û
>W2010954045
NESM01000002
Betaproteobacteria
Limnohabitans sp. 15K [NESM]
195895
195822
-
Cys
GCA
[ENA]
¡û
>W2010954086
NESN01000001
Betaproteobacteria
Limnohabitans parvus II-B4 [NESN]
278493
278420
-
Cys
GCA
[ENA]
¡û
>W2010954186
NESP01000001
Betaproteobacteria
Limnohabitans curvus MWH-C5 [NESP]
381622
381549
-
Cys
GCA
[ENA]
¡û
>W2011753112
SZVI01000009
Betaproteobacteria
Rhodoferax sp. BLA1 [SZVI]
485754
485681
-
Cys
GCA
[ENA]
¡û
>SRA1051545
SRR035098.26241
454 Sequencing (SRP001819)
386
313
-
Cys
GCA
[SRA]
>WENV032465
AACY021449395
Marine microbial communities from Global Ocean Sampling (GOS)
156
229
+
Cys
GCA
[ENA]
>W2110566507
JAGQDE010000009
Betaproteobacteria
Ideonella sp. 4Y11 [JAGQDE]
179619
179692
+
Cys
GCA
[ENA]
¡û
>W2110600566
JAHFZF010000013
Betaproteobacteria
Rhodoferax sp. U11-2br [JAHFZF]
11985
12058
+
Cys
GCA
[ENA]
¡û
>C211016742
AP024238
Betaproteobacteria
Rhodoferax sp. MIZ03 [AP024238]
3435553
3435480
-
Cys
GCA
-
¡û
>C211314871
CP072852
Betaproteobacteria
Rhodoferax sp. PAMC29310 [CP072852]
1420775
1420702
-
Cys
GCA
-
¡û
>W2110734437
JAJCTH010000001
Betaproteobacteria
Rhodoferax sp. U2-2l [JAJCTH]
71220
71293
+
Cys
GCA
[ENA]
¡û
>C231247885
CP087990
Betaproteobacteria
Comamonadaceae bacterium M7527 [CP087990]
158714
158787
+
Cys
GCA
-
¡û
>C231249266
CP088081
Betaproteobacteria
Ideonella dechloratans CCUG 30977 [CP088081]
2410652
2410579
-
Cys
GCA
-
¡û
>W2130043394
NRRK01000041
Betaproteobacteria
Rhodoferax fermentans DSM 10138 [NRRK]
28768
28695
-
Cys
GCA
[ENA]
¡û
>W1510720106
CXON01000008
Betaproteobacteria
Limnohabitans sp. 2KL-3 [CXON]
122369
122296
-
Cys
GCA
[ENA]
¡û
>W1510720195
CXOP01000002
Betaproteobacteria
Limnohabitans sp. 2KL-27 [CXOP]
1992639
1992566
-
Cys
GCA
[ENA]
¡û
>W1511432386
JUGM01000007
Betaproteobacteria
Methylibium sp. CF059 [JUGM]
416339
416412
+
Cys
GCA
[ENA]
¡û
>C161037050
CP011774
Betaproteobacteria
Limnohabitans sp. 63ED37-2 [CP011774]
1075828
1075901
+
Cys
GCA
[Ensembl]
¡û
>W121112455
ALKN01000048
Betaproteobacteria
Limnohabitans sp. Rim28 [ALKN]
51149
51076
-
Cys
GCA
[ENA]
¡û
>W121112462
ALKO01000003
Betaproteobacteria
Limnohabitans sp. Rim47 [ALKO]
345990
346063
+
Cys
GCA
[ENA]
¡û
>W1610189964
FBYA01000001
Betaproteobacteria
Limnohabitans sp. Rim47 [FBYA]
811469
811542
+
Cys
GCA
[ENA]
¡û
>W1710191580
FBYA01000001
Betaproteobacteria
Limnohabitans sp. Rim47 [FBYA]
811469
811542
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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