This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448322 (99 seq.)
>W131217078
ATWK01000015
Bacteroidota
Prevotella denticola DSM 20614 [ATWK]
11307
11236
-
Gly
CCC
[ENA]
¡û
>W131228011
AUFP01000005
Bacteroidota
Segatella albensis DSM 11370 [AUFP]
190382
190453
+
Gly
CCC
[ENA]
¡û
>W131233752
AUKF01000011
Bacteroidota
Segatella baroniae C21a [AUKF]
78133
78206
+
Gly
CCC
[ENA]
¡û
>WENV180007369
FLSA01006324
[FLSA] metagenome; saliva
797
726
-
Gly
CCC
[ENA]
¡û
>WENV180119092
OASD01010252
[OASD] human gut metagenome; ENVO:feces
466
395
-
Gly
CCC
[ENA]
¡û
>WENV180119729
OASE01003779
[OASE] human gut metagenome; ENVO:feces
2140
2211
+
Gly
CCC
[ENA]
¡û
>WENV180198555
OBAD01000634
[OBAD] human gut metagenome; ENVO:feces
6482
6411
-
Gly
CCC
[ENA]
¡û
>WENV180204182
OBAH01000064
[OBAH] human gut metagenome; human gut
20111
20182
+
Gly
CCC
[ENA]
¡û
>WENV180206229
OBAI01000111
[OBAI] human gut metagenome; human gut
82547
82476
-
Gly
CCC
[ENA]
¡û
>WENV180229543
OBCI01000248
[OBCI] human gut metagenome; human gut
11464
11535
+
Gly
CCC
[ENA]
¡û
>WENV180230115
OBCL01000061
[OBCL] human gut metagenome; human gut
11296
11225
-
Gly
CCC
[ENA]
¡û
>WENV180324467
OBKS01000023
[OBKS] human gut metagenome; human gut
75192
75263
+
Gly
CCC
[ENA]
¡û
>WENV180328860
OBKV01000030
[OBKV] human gut metagenome; human gut
82546
82475
-
Gly
CCC
[ENA]
¡û
>WENV180332973
OBLF01000074
[OBLF] metagenome; feces
22709
22780
+
Gly
CCC
[ENA]
¡û
>WENV180339209
OBLI01002828
[OBLI] pig gut metagenome; faeces
11129
11200
+
Gly
CCC
[ENA]
¡û
>WENV180349734
OBLO01105307
[OBLO] metagenome; feces
554
483
-
Gly
CCC
[ENA]
¡û
>WENV180403464
OBRT01000498
[OBRT] human gut metagenome; ENVO:feces
403
332
-
Gly
CCC
[ENA]
¡û
>WENV180405236
OBTM01000074
[OBTM] human gut metagenome; ENVO:feces
17475
17546
+
Gly
CCC
[ENA]
¡û
>WENV180564653
OCLF01000106
[OCLF] human gut metagenome; human gut
12462
12533
+
Gly
CCC
[ENA]
¡û
>WENV180627995
OCQO01011129
[OCQO] human gut metagenome; human gut
91
20
-
Gly
CCC
[ENA]
¡û
>WENV180632773
OCQZ01010659
[OCQZ] human gut metagenome; human gut
250
179
-
Gly
CCC
[ENA]
¡û
>WENV180845081
ODKR01010644
[ODKR] human metagenome; G_DNA_Posterior fornix
22
93
+
Gly
CCC
[ENA]
¡û
>WENV180850257
ODKV01004068
[ODKV] human metagenome; G_DNA_Stool
5380
5309
-
Gly
CCC
[ENA]
¡û
>WENV180915143
ODTB01000171
[ODTB] human metagenome; G_DNA_Stool
18781
18852
+
Gly
CCC
[ENA]
¡û
>WENV181098723
OECI01000251
[OECI] human metagenome; G_DNA_Stool
54074
54003
-
Gly
CCC
[ENA]
¡û
>WENV181544655
OGIG01000859
[OGIG] metagenome; Human gut stool
1963
1892
-
Gly
CCC
[ENA]
¡û
>WENV181574556
OGJT01000815
[OGJT] metagenome; Human gut stool
8938
8867
-
Gly
CCC
[ENA]
¡û
>WENV181581311
OGKA01004404
[OGKA] metagenome; Human gut stool
6321
6250
-
Gly
CCC
[ENA]
¡û
>WENV181589416
OGKL01000444
[OGKL] metagenome; Human gut stool
465
394
-
Gly
CCC
[ENA]
¡û
>WENV181950934
OGZG01020345
[OGZG] human gut metagenome; faeces
529
458
-
Gly
CCC
[ENA]
¡û
>W141225290
BAJD01000002
Bacteroidota
Segatella albensis JCM 12258 [BAJD]
190013
190084
+
Gly
CCC
[ENA]
¡û
>W141225437
BAJG01000010
Bacteroidota
Prevotella denticola JCM 13449 [BAJG]
74156
74227
+
Gly
CCC
[ENA]
¡û
>WENV182522287
OIWS01000235
[OIWS] human gut metagenome; faeces
19091
19162
+
Gly
CCC
[ENA]
¡û
>WENV182659586
OJML01023129
[OJML] human gut metagenome; feces
465
394
-
Gly
CCC
[ENA]
¡û
>WENV182876765
OKRY01001202
[OKRY] human gut metagenome; faeces
8109
8180
+
Gly
CCC
[ENA]
¡û
>WENV183035110
OLFZ01001616
[OLFZ] human gut metagenome; faeces
5446
5375
-
Gly
CCC
[ENA]
¡û
>WENV183035389
OLFZ01005567
[OLFZ] human gut metagenome; faeces
4128
4057
-
Gly
CCC
[ENA]
¡û
>WENV183036007
OLGA01000052
[OLGA] human gut metagenome; faeces
58483
58412
-
Gly
CCC
[ENA]
¡û
>WENV183050466
OLGI01000658
[OLGI] human gut metagenome; faeces
19195
19266
+
Gly
CCC
[ENA]
¡û
>WENV183071349
OLIS01006854
[OLIS] human gut metagenome; feces
1911
1840
-
Gly
CCC
[ENA]
¡û
>WENV183225379
OLQN01068786
[OLQN] human gut metagenome; faeces
80
151
+
Gly
CCC
[ENA]
¡û
>WENV183340328
OLWL01007581
[OLWL] human gut metagenome; feces
2316
2387
+
Gly
CCC
[ENA]
¡û
>WENV183360140
OLXI01006178
[OLXI] human gut metagenome; feces
2907
2978
+
Gly
CCC
[ENA]
¡û
>WENV183370400
OLXU01000317
[OLXU] human gut metagenome; feces
1713
1642
-
Gly
CCC
[ENA]
¡û
>WENV183379933
OLYF01000085
[OLYF] human gut metagenome; feces
2490
2561
+
Gly
CCC
[ENA]
¡û
>WENV183396745
OLZJ01000014
[OLZJ] human gut metagenome; feces
76985
77056
+
Gly
CCC
[ENA]
¡û
>WENV183408060
OMAD01000010
[OMAD] human gut metagenome; feces
120233
120304
+
Gly
CCC
[ENA]
¡û
>WENV183410156
OMAH01000389
[OMAH] human gut metagenome; feces
1883
1812
-
Gly
CCC
[ENA]
¡û
>WENV183412187
OMAM01000012
[OMAM] human gut metagenome; feces
123407
123478
+
Gly
CCC
[ENA]
¡û
>WENV183413705
OMAO01000019
[OMAO] human gut metagenome; feces
13721
13650
-
Gly
CCC
[ENA]
¡û
>WENV183420896
OMBB01000035
[OMBB] human gut metagenome; feces
76985
77056
+
Gly
CCC
[ENA]
¡û
>WENV183451028
OMDB01000002
[OMDB] human gut metagenome; feces
76985
77056
+
Gly
CCC
[ENA]
¡û
>WENV183489982
OMGB01000003
[OMGB] human gut metagenome; feces
169889
169960
+
Gly
CCC
[ENA]
¡û
>WENV183504126
OMGV01000321
[OMGV] human gut metagenome; human gut
19997
19926
-
Gly
CCC
[ENA]
¡û
>WENV183572950
OOCG01000870
[OOCG] human gut metagenome; human gut
2517
2588
+
Gly
CCC
[ENA]
¡û
>WENV183643528
OQVO01026279
[OQVO] human gut metagenome; human gut
859
788
-
Gly
CCC
[ENA]
¡û
>WENV183651565
OQVU01001011
[OQVU] human gut metagenome; human gut
1899
1828
-
Gly
CCC
[ENA]
¡û
>WENV170047946
CDYZ01063253
[CDYZ] gut metagenome; human stools
7154
7227
+
Gly
CCC
[ENA]
¡û
>WENV170049176
CDZA01048828
[CDZA] gut metagenome; human stools
14038
13965
-
Gly
CCC
[ENA]
¡û
>WENV170050498
CDZB01029215
[CDZB] gut metagenome; human stools
15157
15230
+
Gly
CCC
[ENA]
¡û
>WENV170777475
LXOW01286593
[LXOW] bovine gut metagenome; Cow rumen
1675
1604
-
Gly
CCC
[ENA]
¡û
>C191084041
CP032056
Bacteroidota
Prevotella denticola KCOM 1525 [CP032056, CP032057]
342964
343035
+
Gly
CCC
-
¡û
>W1911154446
NPJF01000040
Bacteroidota
Prevotella bryantii TC1-1 [NPJF]
200
271
+
Gly
CCC
[ENA]
¡û
>W1911248023
NSMA01000007
Bacteroidota
Prevotella intermedia WW414 [NSMA]
86308
86379
+
Gly
CCC
[ENA]
¡û
>W1810080058
PENE01000002
Bacteroidota
Prevotella intermedia KCOM 1945 [PENE]
675035
675106
+
Gly
CCC
[ENA]
¡û
>W1810080146
PENG01000002
Bacteroidota
Prevotella intermedia KCOM 2832 [PENG]
80021
80092
+
Gly
CCC
[ENA]
¡û
>W1810866572
QTXV01000001
Bacteroidota
Prevotella sp. AM42-24 [QTXV]
33396
33467
+
Gly
CCC
[ENA]
¡û
>W2010261361
CABJFU020000001
Bacteroidota
Prevotellaceae bacterium [CABJFU]
33396
33467
+
Gly
CCC
[ENA]
¡û
>W2010343804
CADBHP010000025
Bacteroidota
Prevotella bryantii [CADBHP]
3438
3367
-
Gly
CCC
[ENA]
¡û
>W2011024311
NPJF01000040
Bacteroidota
Prevotella bryantii TC1-1 [NPJF]
200
271
+
Gly
CCC
[ENA]
¡û
>W2011576735
SGVY01000005
Bacteroidota
Prevotella sp. BCRC 81118 [SGVY]
100962
101033
+
Gly
CCC
[ENA]
¡û
>W2011836270
UGTM01000001
Bacteroidota
Prevotella denticola NCTC13067 [UGTM]
839501
839430
-
Gly
CCC
[ENA]
¡û
>W2110072946
BPTR01000001
Bacteroidota
Prevotella bryantii DSM 11371 [BPTR]
830516
830587
+
Gly
CCC
[ENA]
¡û
>W2110074521
CABFMA010000033
Bacteroidota
Prevotella melaninogenica [CABFMA]
238372
238301
-
Gly
CCC
[ENA]
¡û
>W2110606740
JAHKBE010000004
Bacteroidota
Hallella sp. CLA-AA-H145 [JAHKBE]
77657
77729
+
Gly
CCC
[ENA]
¡û
>W2110640919
JAHRGG010000015
Bacteroidota
Prevotella hominis HDD12 [JAHRGG]
15540
15469
-
Gly
CCC
[ENA]
¡û
>W2110659684
JAHXCD010000018
Bacteroidota
Prevotella melaninogenica SCHI0043.S.2 [JAHXCD]
14129
14200
+
Gly
CCC
[ENA]
¡û
>W2110659914
JAHXCJ010000002
Bacteroidota
Prevotella denticola SCHI0027.S.14 [JAHXCJ]
12411
12340
-
Gly
CCC
[ENA]
¡û
>W2110660008
JAHXCL010000004
Bacteroidota
Prevotella denticola SCHI0027.S.12 [JAHXCL]
172822
172893
+
Gly
CCC
[ENA]
¡û
>W2110660249
JAHXCQ010000011
Bacteroidota
Prevotella denticola SCHI0021.S.9 [JAHXCQ]
97822
97893
+
Gly
CCC
[ENA]
¡û
>W2110661111
JAHXRC010000008
Bacteroidota
Prevotella denticola SCHI0042.S.4 [JAHXRC]
10030
10101
+
Gly
CCC
[ENA]
¡û
>C211306975
CP072371
Bacteroidota
Prevotella denticola F0288 [CP072371, CP072372]
830086
830157
+
Gly
CCC
-
¡û
>C211307044
CP072373
Bacteroidota
Prevotella denticola F0119 [CP072373]
2041823
2041752
-
Gly
CCC
-
¡û
>C211307081
CP072374
Bacteroidota
Prevotella denticola F0115 [CP072374, CP072375]
780079
780008
-
Gly
CCC
-
¡û
>C231306394
CP091796
Bacteroidota
Prevotella bryantii 92/1 [CP091795, CP091796]
2270619
2270690
+
Gly
CCC
-
¡û
>C231306485
CP091798
Bacteroidota
Prevotella bryantii TS1-5 [CP091797, CP091798]
1120975
1120904
-
Gly
CCC
-
¡û
>C231306546
CP091799
Bacteroidota
Prevotella bryantii B14 [CP091799, CP091800]
752753
752682
-
Gly
CCC
-
¡û
>C231306619
CP091801
Bacteroidota
Prevotella bryantii TC1-1 [CP091801, CP091802]
1114582
1114511
-
Gly
CCC
-
¡û
>W10119827
ADWO01000065
Bacteroidota
Segatella baroniae B14 [ADWO]
6410
6483
+
Gly
CCC
[ENA]
¡û
>C241338527
CP137559
Bacteroidota
Segatella hominis HDD12 [CP137559]
1200383
1200312
-
Gly
CCC
-
¡û
>C11116999
CP002589
Bacteroidota
Prevotella denticola F0289 [CP002589]
1614034
1614105
+
Gly
CCC
[Ensembl]
¡û
>W1511351791
JRNO01000039
Bacteroidota
Prevotella denticola DNF00960 [JRNO]
35667
35738
+
Gly
CCC
[ENA]
¡û
>W11126382
ADWO01000065
Bacteroidota
Segatella baroniae B14 [ADWO]
6410
6483
+
Gly
CCC
[ENA]
¡û
>W11151895
AEXO01000026
Bacteroidota
Prevotella denticola CRIS 18C-A [AEXO]
129379
129450
+
Gly
CCC
[ENA]
¡û
>W11164344
AFJE01000025
Bacteroidota
Hallella multisaccharivorax DSM 17128 [AFJE]
333470
333399
-
Gly
CCC
[ENA]
¡û
>W11170790
AFPW01000003
Bacteroidota
Prevotella dentalis DSM 3688 [AFPW]
60469
60396
-
Gly
CCC
[ENA]
¡û
>W1710522337
FNHC01000006
Bacteroidota
Segatella bryantii [FNHC]
147703
147776
+
Gly
CCC
[ENA]
¡û
>W1710532803
FNQQ01000001
Bacteroidota
Segatella bryantii [FNQQ]
83747
83674
-
Gly
CCC
[ENA]
¡û
>W1710549410
FOEM01000008
Bacteroidota
Segatella baroniae B14 [FOEM]
94618
94545
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK