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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448325 (53 seq.)
>W1710785500
LJHX01000085
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
31086
31012
-
Val
TAC
[ENA]
¡û
>W1710991233
LPXN01000094
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
97427
97353
-
Val
TAC
[ENA]
¡û
>W1711116565
LUCI01000032
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
28273
28199
-
Val
TAC
[ENA]
¡û
>W1711116609
LUCJ01000014
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
308654
308728
+
Val
TAC
[ENA]
¡û
>W1711391659
MELX01000011
Alphaproteobacteria
Alphaproteobacteria bacterium GWA1_45_9 [MELX]
17367
17293
-
Val
TAC
[ENA]
¡û
>W1711391727
MELZ01000052
Alphaproteobacteria
Alphaproteobacteria bacterium GWB1_45_5 [MELZ]
1998
1924
-
Val
TAC
[ENA]
¡û
>W1711466184
MJMD01000025
Alphaproteobacteria
Novacetimonas hansenii [MJMD]
35717
35643
-
Val
TAC
[ENA]
¡û
>C171032903
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
1695993
1695919
-
Val
TAC
-
¡û
>C171032927
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
1005752
1005826
+
Val
TAC
-
¡û
>C010088
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
98713
98639
-
Val
TAC
[Ensembl]
¡û
>WENV180283099
OBIC01112262
[OBIC] beach sand metagenome; beach sand
141
215
+
Val
TAC
[ENA]
¢þ
>WENV180351482
OBLQ010061263
[OBLQ] soil metagenome; soil
1196
1270
+
Val
TAC
[ENA]
¢þ
>W141200337
AYXS01000001
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
399885
399811
-
Val
TAC
[ENA]
¡û
>W141229586
BAND01000060
Alphaproteobacteria
Acidomonas methanolica NBRC 104435 [BAND]
52749
52675
-
Val
TAC
[ENA]
¡û
>W141247932
CBLX010000009
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
166378
166452
+
Val
TAC
[ENA]
¡û
>WENV182548871
OJBX01000850
[OJBX] seawater metagenome; Sea water
6291
6365
+
Val
TAC
[ENA]
¢þ
>WENV182581881
OJGZ01000217
[OJGZ] seawater metagenome; Sea water
20485
20559
+
Val
TAC
[ENA]
¢þ
>WENV183661842
ORJL010141280
[ORJL] groundwater metagenome; groundwater
680
754
+
Val
TAC
[ENA]
¢þ
>C181221236
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
98711
98637
-
Val
TAC
-
¡û
>W1910181771
BJMI01000003
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
196178
196252
+
Val
TAC
[ENA]
¡û
>W1910183159
BJNM01000003
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
159030
158956
-
Val
TAC
[ENA]
¡û
>W1910695599
MDVY01000126
Alphaproteobacteria
Novacetimonas hansenii ATCC 53582 [MDVY]
7633
7707
+
Val
TAC
[ENA]
¡û
>W1910698420
MEMP01000022
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_45_8 [MEMP]
3445
3371
-
Val
TAC
[ENA]
¡û
>W1910990740
NKUD01000021
Alphaproteobacteria
Novacetimonas hansenii LMG 23726 [NKUD]
12797
12871
+
Val
TAC
[ENA]
¡û
>W1910990756
NKUE01000002
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [NKUE]
212847
212773
-
Val
TAC
[ENA]
¡û
>W1910990816
NKUF01000008
Alphaproteobacteria
Gluconacetobacter entanii LTH 4560 [NKUF]
36154
36080
-
Val
TAC
[ENA]
¡û
>W1911597836
PNQZ01000059
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
114079
114005
-
Val
TAC
[ENA]
¡û
>W1810000803
BEWP01000005
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
122672
122598
-
Val
TAC
[ENA]
¡û
>W1810223472
POTC01000004
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [POTC]
65445
65519
+
Val
TAC
[ENA]
¡û
>W1810268392
PRCW01000062
Alphaproteobacteria
Novacetimonas pomaceti AV446 [PRCW]
41498
41424
-
Val
TAC
[ENA]
¡û
>W1810763142
QQAW01000004
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
139941
139867
-
Val
TAC
[ENA]
¡û
>C151006226
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
98699
98625
-
Val
TAC
[Ensembl]
¡û
>C161001082
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
1218792
1218866
+
Val
TAC
[Ensembl]
¡û
>W121016323
AGQV01000002
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
305238
305164
-
Val
TAC
[ENA]
¡û
>W1610026866
AVFK01000002
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
274732
274806
+
Val
TAC
[ENA]
¡û
>W1610624131
LHZD01000017
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
32744
32818
+
Val
TAC
[ENA]
¡û
>W1610624194
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
123255
123329
+
Val
TAC
[ENA]
¡û
>W1610624285
LHZG01000180
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
133487
133413
-
Val
TAC
[ENA]
¡û
>W1610624512
LHZL01000168
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
68256
68330
+
Val
TAC
[ENA]
¡û
>W1610624781
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
122914
122840
-
Val
TAC
[ENA]
¡û
>W1610649306
LJHX01000085
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
31086
31012
-
Val
TAC
[ENA]
¡û
>W1610845905
LPXN01000094
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
97427
97353
-
Val
TAC
[ENA]
¡û
>W1610927924
LUCI01000032
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
28273
28199
-
Val
TAC
[ENA]
¡û
>W1610927968
LUCJ01000014
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
308654
308728
+
Val
TAC
[ENA]
¡û
>W1710023031
AVFK01000002
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
274732
274806
+
Val
TAC
[ENA]
¡û
>W1710624717
JOPF01000004
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
285425
285351
-
Val
TAC
[ENA]
¡û
>W1710624969
JOPL01000087
Alphaproteobacteria
Acetobacter sp. DsW_063 [JOPL]
585
659
+
Val
TAC
[ENA]
¡û
>W1710755249
LHZD01000017
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
32744
32818
+
Val
TAC
[ENA]
¡û
>W1710755312
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
123255
123329
+
Val
TAC
[ENA]
¡û
>W1710755403
LHZG01000180
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
133487
133413
-
Val
TAC
[ENA]
¡û
>W1710755630
LHZL01000168
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
68256
68330
+
Val
TAC
[ENA]
¡û
>W1710755704
LHZN01000128
Alphaproteobacteria
Gluconobacter albidus [LHZN]
34877
34951
+
Val
TAC
[ENA]
¡û
>W1710755899
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
122914
122840
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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