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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448352 (85 seq.)
>W1711308477
MAPZ01000026
Bacillota
Clostridium paraputrificum [MAPZ]
2185
2111
-
Gly
GCC
[ENA]
¡û
>W1711308481
MAPZ01000026
Bacillota
Clostridium paraputrificum [MAPZ]
1850
1776
-
Gly
GCC
[ENA]
¡û
>W1711462247
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
3750
3676
-
Gly
GCC
[ENA]
¡û
>W1711462254
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
3158
3084
-
Gly
GCC
[ENA]
¡û
>C171030635
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1452853
1452779
-
Gly
GCC
-
¡û
>C171030642
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1452261
1452187
-
Gly
GCC
-
¡û
>C171059513
CP017253
Bacillota
Clostridium taeniosporum 1/k [CP017253]
394725
394799
+
Gly
GCC
-
¡û
>C171059520
CP017253
Bacillota
Clostridium taeniosporum 1/k [CP017253]
395331
395405
+
Gly
GCC
-
¡û
>WENV180137363
OATO01010645
[OATO] human gut metagenome; faeces
389
315
-
Gly
GCC
[ENA]
¢þ
>WENV180191155
OAXB01001675
[OAXB] human gut metagenome; faeces
297
223
-
Gly
GCC
[ENA]
¢þ
>WENV180191310
OAXB01020011
[OAXB] human gut metagenome; faeces
308
382
+
Gly
GCC
[ENA]
¢þ
>WENV180316671
OBKI01090829
[OBKI] human gut metagenome; human gut
20
94
+
Gly
GCC
[ENA]
¢þ
>WENV180439786
OBWT01014372
[OBWT] human gut metagenome; faeces
132
58
-
Gly
GCC
[ENA]
¢þ
>WENV180445822
OBXA01029800
[OBXA] human gut metagenome; faeces
479
553
+
Gly
GCC
[ENA]
¢þ
>WENV180486303
OBZL01003702
[OBZL] human gut metagenome; faeces
544
470
-
Gly
GCC
[ENA]
¢þ
>WENV180486342
OBZL01019683
[OBZL] human gut metagenome; faeces
52
126
+
Gly
GCC
[ENA]
¢þ
>WENV180495107
OCAA01006047
[OCAA] human gut metagenome; faeces
2408
2334
-
Gly
GCC
[ENA]
¢þ
>WENV180495109
OCAA01006047
[OCAA] human gut metagenome; faeces
2086
2012
-
Gly
GCC
[ENA]
¢þ
>WENV181220369
OFCQ01003104
[OFCQ] metagenome; Human gut stool
69
143
+
Gly
GCC
[ENA]
¢þ
>WENV181220596
OFCR01001058
[OFCR] metagenome; Human gut stool
1417
1343
-
Gly
GCC
[ENA]
¢þ
>WENV181225985
OFDJ01003967
[OFDJ] metagenome; Human gut stool
1168
1094
-
Gly
GCC
[ENA]
¢þ
>WENV181798874
OGRX01000800
[OGRX] human gut metagenome; fecal sample 2 from infant 8
134
60
-
Gly
GCC
[ENA]
¢þ
>WENV181802006
OGSC01001059
[OGSC] human gut metagenome; fecal sample 8 from infant 5
7266
7340
+
Gly
GCC
[ENA]
¢þ
>WENV181805306
OGSI01000041
[OGSI] human gut metagenome; fecal sample 4 from infant 8
95734
95808
+
Gly
GCC
[ENA]
¢þ
>WENV181806268
OGSK01000513
[OGSK] human gut metagenome; fecal sample 2 from infant 5
7257
7331
+
Gly
GCC
[ENA]
¢þ
>WENV181807413
OGSO01001658
[OGSO] human gut metagenome; fecal sample 3 from infant 6
384
458
+
Gly
GCC
[ENA]
¢þ
>WENV181807417
OGSO01001658
[OGSO] human gut metagenome; fecal sample 3 from infant 6
719
793
+
Gly
GCC
[ENA]
¢þ
>WENV181809797
OGST01010564
[OGST] human gut metagenome; fecal sample 7 from infant 6
470
396
-
Gly
GCC
[ENA]
¢þ
>WENV181809801
OGST01010564
[OGST] human gut metagenome; fecal sample 7 from infant 6
135
61
-
Gly
GCC
[ENA]
¢þ
>WENV181810115
OGSU01000914
[OGSU] human gut metagenome; fecal sample 7 from infant 5
220
146
-
Gly
GCC
[ENA]
¢þ
>WENV181834561
OGUR01002404
[OGUR] metagenome; Human gut stool
3590
3664
+
Gly
GCC
[ENA]
¢þ
>WENV182409755
OIFJ01000185
[OIFJ] human gut metagenome; stool
42575
42649
+
Gly
GCC
[ENA]
¢þ
>WENV182803637
OJUM01001893
[OJUM] human gut metagenome; human gut
901
975
+
Gly
GCC
[ENA]
¢þ
>WENV182804865
OJUX01004583
[OJUX] human gut metagenome; human gut
1255
1181
-
Gly
GCC
[ENA]
¢þ
>WENV182807439
OJVW01003000
[OJVW] human gut metagenome; human gut
148
222
+
Gly
GCC
[ENA]
¢þ
>WENV182807447
OJVW01003000
[OJVW] human gut metagenome; human gut
805
879
+
Gly
GCC
[ENA]
¢þ
>WENV182809298
OJWO01001384
[OJWO] human gut metagenome; human gut
409
483
+
Gly
GCC
[ENA]
¢þ
>WENV182809302
OJWO01001384
[OJWO] human gut metagenome; human gut
744
818
+
Gly
GCC
[ENA]
¢þ
>WENV182809457
OJWQ01002221
[OJWQ] human gut metagenome; human gut
556
482
-
Gly
GCC
[ENA]
¢þ
>WENV182813705
OJYF01003963
[OJYF] human gut metagenome; human gut
299
225
-
Gly
GCC
[ENA]
¢þ
>WENV182823398
OKBT01000486
[OKBT] human gut metagenome; human gut
754
828
+
Gly
GCC
[ENA]
¢þ
>WENV182823497
OKBU01002758
[OKBU] human gut metagenome; human gut
385
459
+
Gly
GCC
[ENA]
¢þ
>WENV182823664
OKBV01005221
[OKBV] human gut metagenome; human gut
415
489
+
Gly
GCC
[ENA]
¢þ
>WENV182828321
OKDF01001085
[OKDF] human gut metagenome; human gut
1727
1801
+
Gly
GCC
[ENA]
¢þ
>WENV182828852
OKDJ01003636
[OKDJ] human gut metagenome; human gut
386
460
+
Gly
GCC
[ENA]
¢þ
>WENV182839797
OKHF01006100
[OKHF] human gut metagenome; human gut
628
554
-
Gly
GCC
[ENA]
¢þ
>WENV182840248
OKHK01004862
[OKHK] human gut metagenome; human gut
155
81
-
Gly
GCC
[ENA]
¢þ
>WENV182841492
OKHV01002062
[OKHV] human gut metagenome; human gut
299
225
-
Gly
GCC
[ENA]
¢þ
>WENV182842494
OKIE01002340
[OKIE] human gut metagenome; human gut
164
238
+
Gly
GCC
[ENA]
¢þ
>WENV182846039
OKJI01002866
[OKJI] human gut metagenome; human gut
385
459
+
Gly
GCC
[ENA]
¢þ
>WENV182849075
OKKN01000301
[OKKN] human gut metagenome; human gut
628
554
-
Gly
GCC
[ENA]
¢þ
>WENV182855066
OKMX01004577
[OKMX] human gut metagenome; human gut
156
230
+
Gly
GCC
[ENA]
¢þ
>WENV182855792
OKNE01001008
[OKNE] human gut metagenome; human gut
1779
1705
-
Gly
GCC
[ENA]
¢þ
>WENV182862249
OKPK01001956
[OKPK] human gut metagenome; human gut
554
628
+
Gly
GCC
[ENA]
¢þ
>WENV182863758
OKPU01003132
[OKPU] human gut metagenome; human gut
563
489
-
Gly
GCC
[ENA]
¢þ
>WENV182863762
OKPU01003132
[OKPU] human gut metagenome; human gut
228
154
-
Gly
GCC
[ENA]
¢þ
>WENV182864411
OKQC01004062
[OKQC] human gut metagenome; human gut
164
238
+
Gly
GCC
[ENA]
¢þ
>WENV182961781
OKWL01000330
[OKWL] human gut metagenome; stool
24294
24368
+
Gly
GCC
[ENA]
¢þ
>WENV182961785
OKWL01000330
[OKWL] human gut metagenome; stool
24629
24703
+
Gly
GCC
[ENA]
¢þ
>WENV182962695
OKWO01000039
[OKWO] human gut metagenome; stool
103491
103565
+
Gly
GCC
[ENA]
¢þ
>WENV182962699
OKWO01000039
[OKWO] human gut metagenome; stool
103826
103900
+
Gly
GCC
[ENA]
¢þ
>WENV183087244
OLJG01000407
[OLJG] human gut metagenome; human gut
4389
4463
+
Gly
GCC
[ENA]
¢þ
>WENV183087248
OLJG01000407
[OLJG] human gut metagenome; human gut
4724
4798
+
Gly
GCC
[ENA]
¢þ
>WENV183187607
OLPO01037217
[OLPO] human gut metagenome; faeces
101
175
+
Gly
GCC
[ENA]
¢þ
>WENV183187609
OLPO01037217
[OLPO] human gut metagenome; faeces
426
500
+
Gly
GCC
[ENA]
¢þ
>WENV183751244
PPYE01006139
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3265
3191
-
Gly
GCC
[ENA]
¢þ
>WENV170979621
MTKZ01099228
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
28
102
+
Gly
GCC
[ENA]
¢þ
>C191012421
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
2499874
2499800
-
Gly
GCC
-
¡û
>C191012429
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
2499212
2499138
-
Gly
GCC
-
¡û
>W1911493611
OBIP01000005
Bacillota
Clostridium paraputrificum LH141 [OBIP]
38856
38782
-
Gly
GCC
[ENA]
¡û
>W1911493707
OBIQ01000029
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
42124
42050
-
Gly
GCC
[ENA]
¡û
>W1911493711
OBIQ01000029
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
41788
41714
-
Gly
GCC
[ENA]
¡û
>W1911493857
OBJN01000006
Bacillota
Clostridium paraputrificum LH025 [OBJN]
177225
177299
+
Gly
GCC
[ENA]
¡û
>W1911493861
OBJN01000006
Bacillota
Clostridium paraputrificum LH025 [OBJN]
177560
177634
+
Gly
GCC
[ENA]
¡û
>W1810604867
QGMT01000022
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
2352
2278
-
Gly
GCC
[ENA]
¡û
>W1810604871
QGMT01000022
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
2016
1942
-
Gly
GCC
[ENA]
¡û
>C151014210
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1629460
1629534
+
Gly
GCC
[Ensembl]
¡û
>C151014217
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1630050
1630124
+
Gly
GCC
[Ensembl]
¡û
>W1511551784
JZTY01000036
Bacillota
Clostridium baratii 771-14 [JZTY]
127
201
+
Gly
GCC
[ENA]
¡û
>W1610104253
CZBO01000019
Bacillota
Clostridium baratii [CZBO]
29
103
+
Gly
GCC
[ENA]
¡û
>W1610104358
CZBQ01000018
Bacillota
Clostridium paraputrificum [CZBQ]
1738
1664
-
Gly
GCC
[ENA]
¡û
>W1611056136
MAPZ01000026
Bacillota
Clostridium paraputrificum [MAPZ]
2185
2111
-
Gly
GCC
[ENA]
¡û
>W1611056140
MAPZ01000026
Bacillota
Clostridium paraputrificum [MAPZ]
1850
1776
-
Gly
GCC
[ENA]
¡û
>W1710106957
CZBO01000019
Bacillota
Clostridium baratii [CZBO]
29
103
+
Gly
GCC
[ENA]
¡û
>W1710107062
CZBQ01000018
Bacillota
Clostridium paraputrificum [CZBQ]
1738
1664
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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