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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448412 (72 seq.)
>W1711501461
MKRR01000106
Alphaproteobacteria
Sphingomonas sp. 66-10 [MKRR]
130175
130248
+
Gln
CTG
[ENA]
¡û
>W1711502548
MKSU01000017
Alphaproteobacteria
Sphingomonas sp. 67-36 [MKSU]
35167
35240
+
Gln
CTG
[ENA]
¡û
>W1712056290
NFZT01000001
Alphaproteobacteria
Pacificimonas flava [NFZT]
1996068
1995995
-
Gln
CTG
[ENA]
¡û
>C171075868
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
568384
568457
+
Gln
CTG
-
¡û
>WENV180040628
LLBZ010002867
[LLBZ] soil metagenome; soil from tomato rhizosphere
1544
1471
-
Gln
CTG
[ENA]
¡û
>WENV180327749
OBKT01464876
[OBKT] soil metagenome; soil
163
90
-
Gln
CTG
[ENA]
¡û
>WENV180690228
OCZS010000919
[OCZS] soil metagenome; soil
2677
2750
+
Gln
CTG
[ENA]
¡û
>WENV181192541
OEPS010757247
[OEPS] soil metagenome; soil
240
167
-
Gln
CTG
[ENA]
¡û
>WENV181221883
OFCZ01001140
[OFCZ] metagenome; soil
477
404
-
Gln
CTG
[ENA]
¡û
>WENV181308419
OFIS01016620
[OFIS] sludge metagenome; sludge
899
972
+
Gln
CTG
[ENA]
¡û
>WENV181311956
OFJB01026086
[OFJB] sludge metagenome; sludge
1175
1102
-
Gln
CTG
[ENA]
¡û
>WENV181402316
OFTY01000551
[OFTY] sludge metagenome; sludge
15381
15308
-
Gln
CTG
[ENA]
¡û
>WENV183747981
PPFU01005020
[PPFU] hypolithon metagenome; Antarctic Hypolithon
594
667
+
Gln
CTG
[ENA]
¡û
>WENV183748441
PPFU01039625
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2455
2382
-
Gln
CTG
[ENA]
¡û
>WENV170010829
APMI01030575
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2251
2178
-
Gln
CTG
[ENA]
¡û
>WENV170177040
CEOS01157123
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
235
308
+
Gln
CTG
[ENA]
¡û
>WENV170229746
CEQG01153453
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1215
1142
-
Gln
CTG
[ENA]
¡û
>WENV170576374
FRDC01000491
[FRDC] freshwater metagenome; water
6738
6811
+
Gln
CTG
[ENA]
¡û
>W1911247252
NSLI01000003
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
561035
561108
+
Gln
CTG
[ENA]
¡û
>W1911398108
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1484941
1484868
-
Gln
CTG
[ENA]
¡û
>W1911719129
QQWX01000013
Alphaproteobacteria
Sphingomonas sp. ABOLF S-NIH.Pt19_1214 [QQWX]
84916
84843
-
Gln
CTG
[ENA]
¡û
>W1911765795
QXDC01000003
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
551808
551735
-
Gln
CTG
[ENA]
¡û
>W1810538560
QDFY01000016
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
56682
56755
+
Gln
CTG
[ENA]
¡û
>W1810579379
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
745696
745769
+
Gln
CTG
[ENA]
¡û
>W1810586285
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
496988
496915
-
Gln
CTG
[ENA]
¡û
>W1810594375
QFZL01000003
Alphaproteobacteria
Sphingosinithalassobacter portus FM6 [QFZL]
405459
405386
-
Gln
CTG
[ENA]
¡û
>C151082928
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
1661859
1661786
-
Gln
CTG
-
¡û
>W2010370546
CAHJXA010000209
Alphaproteobacteria
Sphingomonas bacterium [CAHJXA]
3508
3435
-
Gln
CTG
[ENA]
¡û
>W2010669844
JACCAP010000001
Alphaproteobacteria
Sphingomonas sp. R1S6C [JACCAP]
2614938
2614865
-
Gln
CTG
[ENA]
¡û
>W2010669960
JACCAR010000001
Alphaproteobacteria
Sphingomonas sp. R3G8D [JACCAR]
3341383
3341456
+
Gln
CTG
[ENA]
¡û
>W2010709020
JACHLW010000001
Alphaproteobacteria
Sphingomonas sp. R1S3D [JACHLW]
2278001
2278074
+
Gln
CTG
[ENA]
¡û
>W2010719149
JACHZH010000003
Alphaproteobacteria
Sphingomonas sp. BK069 [JACHZH]
288447
288374
-
Gln
CTG
[ENA]
¡û
>W2010719933
JACHZX010000003
Alphaproteobacteria
Sphingomonas sp. BK345 [JACHZX]
205379
205452
+
Gln
CTG
[ENA]
¡û
>W2010721309
JACIAY010000006
Alphaproteobacteria
Sphingomonas sp. BK580 [JACIAY]
75451
75378
-
Gln
CTG
[ENA]
¡û
>W2010724167
JACIDD010000002
Alphaproteobacteria
Sphingomonas desiccabilis DSM 16792 [JACIDD]
1122057
1121984
-
Gln
CTG
[ENA]
¡û
>W2010731774
JACIJI010000001
Alphaproteobacteria
Stakelama sediminis DSM 27203 [JACIJI]
951453
951380
-
Gln
CTG
[ENA]
¡û
>W2010731828
JACIJJ010000002
Alphaproteobacteria
Sphingomonas yantingensis DSM 27244 [JACIJJ]
247486
247559
+
Gln
CTG
[ENA]
¡û
>W2010731911
JACIJL010000001
Alphaproteobacteria
Altererythrobacter atlanticus DSM 100738 [JACIJL]
421470
421397
-
Gln
CTG
[ENA]
¡û
>W2011070757
NSLI01000003
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
561035
561108
+
Gln
CTG
[ENA]
¡û
>W2011134916
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1484941
1484868
-
Gln
CTG
[ENA]
¡û
>W2011287119
QQWX01000013
Alphaproteobacteria
Sphingomonas sp. ABOLF S-NIH.Pt19_1214 [QQWX]
84916
84843
-
Gln
CTG
[ENA]
¡û
>W2011324238
QXDC01000003
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
551808
551735
-
Gln
CTG
[ENA]
¡û
>W2011530267
SBFF01000003
Alphaproteobacteria
Sphingosinicella sp. CPCC 101087 [SBFF]
156177
156250
+
Gln
CTG
[ENA]
¡û
>W2011549765
SDPT01000002
Alphaproteobacteria
Sphingomonas desiccabilis CP1D [SDPT]
34255
34328
+
Gln
CTG
[ENA]
¡û
>W2011623253
SLXN01000002
Alphaproteobacteria
Sphingomonas sp. BK235 [SLXN]
253319
253246
-
Gln
CTG
[ENA]
¡û
>W2011624875
SLYP01000016
Alphaproteobacteria
Sphingomonas sp. JUb134 [SLYP]
42866
42939
+
Gln
CTG
[ENA]
¡û
>W2011647522
SNWD01000005
Alphaproteobacteria
Stakelama pacifica DSM 25059 [SNWD]
194722
194795
+
Gln
CTG
[ENA]
¡û
>W2011670420
SPHY01000009
Alphaproteobacteria
Sphingomonas sp. ZLT-5 [SPHY]
32341
32268
-
Gln
CTG
[ENA]
¡û
>W2011706718
SWKR01000001
Alphaproteobacteria
Sphingomonas sp. L-1-4w-11 [SWKR]
56732
56659
-
Gln
CTG
[ENA]
¡û
>W2012354028
WJSQ01000246
Alphaproteobacteria
Sphingomonas sp. YJ09 [WJSQ]
492
565
+
Gln
CTG
[ENA]
¡û
>W2012439125
WTYM01000040
Alphaproteobacteria
Altererythrobacter salegens MCCC 1K01500 [WTYM]
6444
6517
+
Gln
CTG
[ENA]
¡û
>W2012439225
WTYO01000006
Alphaproteobacteria
Altererythrobacter marinus H32 [WTYO]
13950
14023
+
Gln
CTG
[ENA]
¡û
>W2110030791
BMLU01000005
Alphaproteobacteria
Stakelama pacifica CGMCC 1.7294 [BMLU]
8692
8619
-
Gln
CTG
[ENA]
¡û
>W2110425613
JAELTW010000004
Alphaproteobacteria
Sphingomonas sp. ASV18 [JAELTW]
27040
26967
-
Gln
CTG
[ENA]
¡û
>W2110567538
JAGRQC010000003
Alphaproteobacteria
Sphingomonadaceae bacterium LXI357 [JAGRQC]
379113
379040
-
Gln
CTG
[ENA]
¡û
>W2110569071
JAGSGB010000002
Alphaproteobacteria
Pacificimonas aurantium DSM 107782 [JAGSGB]
798887
798960
+
Gln
CTG
[ENA]
¡û
>W2110659198
JAHWZX010000016
Alphaproteobacteria
Stakelama sp. CBK3Z-3 [JAHWZX]
18710
18637
-
Gln
CTG
[ENA]
¡û
>W2110663347
JAHXZL010000009
Alphaproteobacteria
Sphingomonas sp. RHCKR7 [JAHXZL]
28603
28530
-
Gln
CTG
[ENA]
¡û
>W2110663452
JAHXZN010000007
Alphaproteobacteria
Sphingomonas sp. RRHST34 [JAHXZN]
66381
66308
-
Gln
CTG
[ENA]
¡û
>W2110689635
JAINVU010000001
Alphaproteobacteria
Hephaestia sp. CMS5P-6 [JAINVU]
227819
227892
+
Gln
CTG
[ENA]
¡û
>W2110690846
JAIOKB010000010
Alphaproteobacteria
Sphingomonas yunnanensis YIM 3 [JAIOKB]
3897
3970
+
Gln
CTG
[ENA]
¡û
>C201107497
CP042239
Alphaproteobacteria
Sphingomonas sp. XS-10 [CP042239]
3669737
3669664
-
Gln
CTG
-
¡û
>C211134408
CP060494
Alphaproteobacteria
Sphingosinithalassobacter sp. CS137 [CP060494]
2073405
2073332
-
Gln
CTG
-
¡û
>C211138787
CP060782
Alphaproteobacteria
Sphingomonas sediminicola KACC 15039 [CP060782]
469085
469012
-
Gln
CTG
-
¡û
>C231269210
CP090059
Alphaproteobacteria
Sphingomonas cannabina DM2-R-LB4 [CP090059]
35369
35442
+
Gln
CTG
-
¡û
>C231401963
CP098453
Alphaproteobacteria
Pelagerythrobacter marinus E6 [CP098453]
19212
19285
+
Gln
CTG
-
¡û
>C231572099
CP116005
Alphaproteobacteria
Sphingosinicella microcystinivorans DMF-3 [CP116005]
3219869
3219796
-
Gln
CTG
-
¡û
>C241133232
CP049109
Alphaproteobacteria
Sphingosinithalassobacter tenebrarum zrk23 [CP049109]
461631
461558
-
Gln
CTG
-
¡û
>C241141759
CP050137
Alphaproteobacteria
Sphingomonas sp. CL5.1 [CP050137]
1077143
1077216
+
Gln
CTG
-
¡û
>C241148334
CP051131
Alphaproteobacteria
Parasphingopyxis algicola JCM 31719 [CP051131]
3538019
3538092
+
Gln
CTG
-
¡û
>W1511352569
JROH01000023
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
743
670
-
Gln
CTG
[ENA]
¡û
>W1611004976
LXQM01000012
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
65084
65157
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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