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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448425 (25 seq.)
>W1711135661
LUZH01000235
Bacteroidota
Bacteroidales bacterium Bact_16 [LUZH]
3482
3556
+
Thr
GGT
[ENA]
¡û
>W1711578436
MNQT01000013
Bacteroidota
Bacteroides sp. CAG:1060_57_27 [MNQT]
44940
45014
+
Thr
GGT
[ENA]
¡û
>WENV180001632
FLNX01002852
[FLNX] bioreactor metagenome; Moose rumen
197
269
+
Thr
GGT
[ENA]
¡û
>WENV180002933
FLNY01004296
[FLNY] bioreactor metagenome; Moose rumen
39988
40060
+
Thr
GGT
[ENA]
¡û
>WENV180003049
FLNY01004652
[FLNY] bioreactor metagenome; Moose rumen
24670
24744
+
Thr
GGT
[ENA]
¡û
>WENV180579801
OCMD01043936
[OCMD] human gut metagenome; human gut
34
106
+
Thr
GGT
[ENA]
¡û
>WENV180660156
OCVV010909057
[OCVV] gut metagenome; gut
348
274
-
Thr
GGT
[ENA]
¡û
>WENV180660160
OCVV010909057
[OCVV] gut metagenome; gut
348
274
-
Thr
GGT
[ENA]
¡û
>WENV180664001
OCVV011142291
[OCVV] gut metagenome; gut
52
126
+
Thr
GGT
[ENA]
¡û
>WENV180664002
OCVV011142291
[OCVV] gut metagenome; gut
52
126
+
Thr
GGT
[ENA]
¡û
>WENV180665554
OCVV011190597
[OCVV] gut metagenome; gut
1386
1312
-
Thr
GGT
[ENA]
¡û
>WENV180665558
OCVV011190597
[OCVV] gut metagenome; gut
1386
1312
-
Thr
GGT
[ENA]
¡û
>WENV180667556
OCVV011237859
[OCVV] gut metagenome; gut
182
110
-
Thr
GGT
[ENA]
¡û
>WENV180667560
OCVV011237859
[OCVV] gut metagenome; gut
182
110
-
Thr
GGT
[ENA]
¡û
>WENV180672390
OCVV011326354
[OCVV] gut metagenome; gut
8410
8482
+
Thr
GGT
[ENA]
¡û
>WENV180672394
OCVV011326354
[OCVV] gut metagenome; gut
8410
8482
+
Thr
GGT
[ENA]
¡û
>WENV180675132
OCVV011356732
[OCVV] gut metagenome; gut
2526
2598
+
Thr
GGT
[ENA]
¡û
>WENV180675137
OCVV011356732
[OCVV] gut metagenome; gut
2526
2598
+
Thr
GGT
[ENA]
¡û
>WENV182073866
OHFP01000242
[OHFP] human gut metagenome; feces
957
883
-
Thr
GGT
[ENA]
¡û
>WENV182113797
OHIY01000175
[OHIY] human gut metagenome; feces
39107
39181
+
Thr
GGT
[ENA]
¡û
>WENV182171670
OHMX01009175
[OHMX] human gut metagenome; feces
175
249
+
Thr
GGT
[ENA]
¡û
>WENV182221801
OHQT01010489
[OHQT] human gut metagenome; feces
1479
1405
-
Thr
GGT
[ENA]
¡û
>WENV170775559
LXOW01060477
[LXOW] bovine gut metagenome; Cow rumen
11188
11116
-
Thr
GGT
[ENA]
¡û
>W1610946781
LUZH01000235
Bacteroidota
Bacteroidales bacterium Bact_16 [LUZH]
3482
3556
+
Thr
GGT
[ENA]
¡û
>W1710604110
FUZR01000004
Bacteroidota
Bacteroidales bacterium WCE2004 [FUZR]
127262
127336
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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