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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448426 (101 seq.)
>WENV180010716
FLSD01073981
[FLSD] metagenome; saliva
172
99
-
Cys
GCA
[ENA]
¡û
>WENV180725815
ODGS01003129
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
96
169
+
Cys
GCA
[ENA]
¡û
>WENV180733746
ODGZ01000683
[ODGZ] human metagenome; G_DNA_Supragingival plaque
20946
20873
-
Cys
GCA
[ENA]
¡û
>WENV180833943
ODKD01001132
[ODKD] human metagenome; G_DNA_Supragingival plaque
88
161
+
Cys
GCA
[ENA]
¡û
>WENV180973465
ODUW01006441
[ODUW] human metagenome; G_DNA_Supragingival plaque
67
140
+
Cys
GCA
[ENA]
¡û
>WENV181020360
ODWU01140226
[ODWU] human metagenome; G_DNA_Supragingival plaque
252
179
-
Cys
GCA
[ENA]
¡û
>WENV181029724
ODXF01002453
[ODXF] human metagenome; G_DNA_Supragingival plaque
164
237
+
Cys
GCA
[ENA]
¡û
>WENV181119810
OEFJ01000126
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
117
190
+
Cys
GCA
[ENA]
¡û
>W141251778
CBQV010000757
Betaproteobacteria
Kingella kingae AA068 [CBQV]
599
526
-
Cys
GCA
[ENA]
¡û
>W141251823
CBQW010000773
Betaproteobacteria
Kingella kingae AA105 [CBQW]
580
507
-
Cys
GCA
[ENA]
¡û
>W141251869
CBQX010000520
Betaproteobacteria
Kingella kingae AA255 [CBQX]
595
522
-
Cys
GCA
[ENA]
¡û
>W141251915
CBQY010000213
Betaproteobacteria
Kingella kingae AA417 [CBQY]
606
533
-
Cys
GCA
[ENA]
¡û
>W141252060
CBRB010000822
Betaproteobacteria
Kingella kingae BB016 [CBRB]
559
486
-
Cys
GCA
[ENA]
¡û
>W141252104
CBRC010000828
Betaproteobacteria
Kingella kingae BB060 [CBRC]
585
512
-
Cys
GCA
[ENA]
¡û
>W141252150
CBRD010000430
Betaproteobacteria
Kingella kingae BB114 [CBRD]
607
534
-
Cys
GCA
[ENA]
¡û
>W141252351
CBRH010000927
Betaproteobacteria
Kingella kingae KK88 [CBRH]
580
507
-
Cys
GCA
[ENA]
¡û
>W141252528
CBRM010000964
Betaproteobacteria
Kingella kingae KK141 [CBRM]
577
504
-
Cys
GCA
[ENA]
¡û
>W141252576
CBRN010000282
Betaproteobacteria
Kingella kingae KK101 [CBRN]
606
533
-
Cys
GCA
[ENA]
¡û
>W141252674
CBRP010000951
Betaproteobacteria
Kingella kingae KK238 [CBRP]
498
425
-
Cys
GCA
[ENA]
¡û
>W141252716
CBRQ010000979
Betaproteobacteria
Kingella kingae KK93 [CBRQ]
606
533
-
Cys
GCA
[ENA]
¡û
>W141252761
CBRR010000975
Betaproteobacteria
Kingella kingae BB631 [CBRR]
605
532
-
Cys
GCA
[ENA]
¡û
>W141252798
CBRS010000943
Betaproteobacteria
Kingella kingae KK97 [CBRS]
510
437
-
Cys
GCA
[ENA]
¡û
>W141252842
CBRT010001047
Betaproteobacteria
Kingella kingae CC254 [CBRT]
606
533
-
Cys
GCA
[ENA]
¡û
>W141252883
CBRU010000910
Betaproteobacteria
Kingella kingae KK98 [CBRU]
523
450
-
Cys
GCA
[ENA]
¡û
>W141252930
CBRV010000901
Betaproteobacteria
Kingella kingae KK158 [CBRV]
392
319
-
Cys
GCA
[ENA]
¡û
>W141252975
CBRW010001033
Betaproteobacteria
Kingella kingae D2363 [CBRW]
607
534
-
Cys
GCA
[ENA]
¡û
>W141253016
CBRX010000939
Betaproteobacteria
Kingella kingae KK189 [CBRX]
412
339
-
Cys
GCA
[ENA]
¡û
>W141253064
CBRY010000713
Betaproteobacteria
Kingella kingae D7330 [CBRY]
584
511
-
Cys
GCA
[ENA]
¡û
>W141253110
CBRZ010000308
Betaproteobacteria
Kingella kingae KK260 [CBRZ]
606
533
-
Cys
GCA
[ENA]
¡û
>W141253155
CBSA010001370
Betaproteobacteria
Kingella kingae KK3 [CBSA]
605
532
-
Cys
GCA
[ENA]
¡û
>W141253197
CBSB010000570
Betaproteobacteria
Kingella kingae KK245 [CBSB]
606
533
-
Cys
GCA
[ENA]
¡û
>W141253243
CBSC010000234
Betaproteobacteria
Kingella kingae KK6 [CBSC]
606
533
-
Cys
GCA
[ENA]
¡û
>W141253339
CBSE010000880
Betaproteobacteria
Kingella kingae KK56 [CBSE]
579
506
-
Cys
GCA
[ENA]
¡û
>W141253385
CBSF010000136
Betaproteobacteria
Kingella kingae KK12 [CBSF]
605
532
-
Cys
GCA
[ENA]
¡û
>W141253483
CBSH010000154
Betaproteobacteria
Kingella kingae KK83 [CBSH]
606
533
-
Cys
GCA
[ENA]
¡û
>W141253529
CBSI010000151
Betaproteobacteria
Kingella kingae KK145 [CBSI]
5390
5317
-
Cys
GCA
[ENA]
¡û
>W141253575
CBSJ010000188
Betaproteobacteria
Kingella kingae KK156 [CBSJ]
5390
5317
-
Cys
GCA
[ENA]
¡û
>W141253620
CBSK010000944
Betaproteobacteria
Kingella kingae KK171 [CBSK]
606
533
-
Cys
GCA
[ENA]
¡û
>W141253661
CBSL010001079
Betaproteobacteria
Kingella kingae KK242 [CBSL]
605
532
-
Cys
GCA
[ENA]
¡û
>W141253708
CBSM010000300
Betaproteobacteria
Kingella kingae KK274 [CBSM]
606
533
-
Cys
GCA
[ENA]
¡û
>W141253754
CBSN010000235
Betaproteobacteria
Kingella kingae KK107 [CBSN]
607
534
-
Cys
GCA
[ENA]
¡û
>W141253799
CBSO010000498
Betaproteobacteria
Kingella kingae KK113 [CBSO]
607
534
-
Cys
GCA
[ENA]
¡û
>W141253843
CBSP010000634
Betaproteobacteria
Kingella kingae PV1748 [CBSP]
606
533
-
Cys
GCA
[ENA]
¡û
>W141253889
CBSQ010000592
Betaproteobacteria
Kingella kingae Vir5453 [CBSQ]
606
533
-
Cys
GCA
[ENA]
¡û
>W141253933
CBSR010000931
Betaproteobacteria
Kingella kingae KK60 [CBSR]
608
535
-
Cys
GCA
[ENA]
¡û
>W141253978
CBSS010000969
Betaproteobacteria
Kingella kingae KK128 [CBSS]
570
497
-
Cys
GCA
[ENA]
¡û
>W141254612
CBTD010000931
Betaproteobacteria
Kingella kingae KK75 [CBTD]
502
429
-
Cys
GCA
[ENA]
¡û
>W141254652
CBTE010000950
Betaproteobacteria
Kingella kingae KK190 [CBTE]
508
435
-
Cys
GCA
[ENA]
¡û
>W141254700
CBTF010000176
Betaproteobacteria
Kingella kingae KK199 [CBTF]
5390
5317
-
Cys
GCA
[ENA]
¡û
>W141254742
CBTG010000301
Betaproteobacteria
Kingella kingae KK411 [CBTG]
606
533
-
Cys
GCA
[ENA]
¡û
>W141266100
CCJT01000028
Betaproteobacteria
Kingella kingae [CCJT]
2141
2068
-
Cys
GCA
[ENA]
¡û
>W141267089
CCNJ01000065
Betaproteobacteria
Kingella negevensis Sch538 [CCNJ]
7852
7779
-
Cys
GCA
[ENA]
¡û
>C181037712
CP019448
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [CP019448]
90345
90272
-
Cys
GCA
-
¡û
>C181212631
LS483426
Betaproteobacteria
Kingella kingae NCTC10529 [LS483426]
1715092
1715019
-
Cys
GCA
-
¡û
>W141817015
JQKH01000141
Betaproteobacteria
Alysiella crassa DSM 2578 [JQKH]
2088
2015
-
Cys
GCA
[ENA]
¡û
>W1910230131
FOJK01000022
Betaproteobacteria
Kingella kingae ATCC 23330 [FOJK]
26989
27062
+
Cys
GCA
[ENA]
¡û
>W1910471767
FXBH01000037
Betaproteobacteria
Kingella negevensis SW7208426 [FXBH]
8561
8488
-
Cys
GCA
[ENA]
¡û
>W1910496662
FXUV01000039
Betaproteobacteria
Kingella negevensis [FXUV]
12438
12365
-
Cys
GCA
[ENA]
¡û
>W1910496718
FXUV02000038
Betaproteobacteria
Kingella negevensis [FXUV]
9811
9738
-
Cys
GCA
[ENA]
¡û
>W1910551164
FZRL01000003
Betaproteobacteria
Kingella denitrificans [FZRL]
128219
128146
-
Cys
GCA
[ENA]
¡û
>W1910562114
FZZR01000008
Betaproteobacteria
Neisseria meningitidis [FZZR]
165
238
+
Cys
GCA
[ENA]
¡û
>W1911480065
OAFC01000002
Betaproteobacteria
Neisseria meningitidis [OAFC]
104724
104651
-
Cys
GCA
[ENA]
¡û
>W1911482036
OAGL01000470
Betaproteobacteria
Neisseria meningitidis [OAGL]
187
260
+
Cys
GCA
[ENA]
¡û
>W1911482596
OAGV01000135
Betaproteobacteria
Neisseria meningitidis [OAGV]
167
240
+
Cys
GCA
[ENA]
¡û
>W1911483123
OAHF01000190
Betaproteobacteria
Neisseria meningitidis [OAHF]
6745
6672
-
Cys
GCA
[ENA]
¡û
>W1911483864
OAHU01000016
Betaproteobacteria
Neisseria meningitidis [OAHU]
67
140
+
Cys
GCA
[ENA]
¡û
>W1911486534
OAJV01000089
Betaproteobacteria
Neisseria meningitidis [OAJV]
10232
10159
-
Cys
GCA
[ENA]
¡û
>W1911489311
OALW01000100
Betaproteobacteria
Neisseria meningitidis [OALW]
14410
14337
-
Cys
GCA
[ENA]
¡û
>W1911497185
OCNF01000022
Betaproteobacteria
Alysiella filiformis DSM 16848 [OCNF]
2228
2301
+
Cys
GCA
[ENA]
¡û
>W2010384107
FOJK01000022
Betaproteobacteria
Kingella kingae ATCC 23330 [FOJK]
26989
27062
+
Cys
GCA
[ENA]
¡û
>W2010410672
FXBH01000037
Betaproteobacteria
Kingella negevensis SW7208426 [FXBH]
8561
8488
-
Cys
GCA
[ENA]
¡û
>W2010416421
FXUV02000038
Betaproteobacteria
Kingella negevensis [FXUV]
9811
9738
-
Cys
GCA
[ENA]
¡û
>W2010432694
FZRL01000003
Betaproteobacteria
Kingella denitrificans [FZRL]
128219
128146
-
Cys
GCA
[ENA]
¡û
>W2011158089
OCNF01000022
Betaproteobacteria
Alysiella filiformis DSM 16848 [OCNF]
2228
2301
+
Cys
GCA
[ENA]
¡û
>W2011814569
UFSO01000002
Betaproteobacteria
Alysiella crassa NCTC10283 [UFSO]
1014710
1014783
+
Cys
GCA
[ENA]
¡û
>W2011826399
UGJI01000001
Betaproteobacteria
Kingella kingae NCTC10746 [UGJI]
199330
199403
+
Cys
GCA
[ENA]
¡û
>W2011826628
UGJL01000001
Betaproteobacteria
Kingella denitrificans NCTC10995 [UGJL]
1675643
1675570
-
Cys
GCA
[ENA]
¡û
>W2110199761
JACBKT010000013
Betaproteobacteria
Kingella kingae chl3548 [JACBKT]
43938
44011
+
Cys
GCA
[ENA]
¡û
>W2110199811
JACBKU010000013
Betaproteobacteria
Kingella kingae chl4475 [JACBKU]
2345
2272
-
Cys
GCA
[ENA]
¡û
>W2110199860
JACBKV010000014
Betaproteobacteria
Kingella kingae chl2764 [JACBKV]
2345
2272
-
Cys
GCA
[ENA]
¡û
>C211219655
CP065999
Betaproteobacteria
Kingella denitrificans FDAARGOS_1060 [CP065999]
1754124
1754197
+
Cys
GCA
-
¡û
>C211406154
CP083930
Betaproteobacteria
Simonsiella muelleri DSM 2579 [CP083930]
887652
887725
+
Cys
GCA
-
¡û
>C211406256
CP083931
Betaproteobacteria
Alysiella filiformis DSM 16848 [CP083931]
791208
791135
-
Cys
GCA
-
¡û
>W10111211
ADCY01000014
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [ADCY]
8219
8292
+
Cys
GCA
[ENA]
¡û
>C231300262
CP091518
Betaproteobacteria
Kingella kingae 4177/66 [CP091518]
1383147
1383074
-
Cys
GCA
-
¡û
>C231300338
CP091519
Betaproteobacteria
Alysiella crassa S6 [CP091519]
42416
42343
-
Cys
GCA
-
¡û
>C231314989
CP092357
Betaproteobacteria
Wielerella bovis 10LB456 [CP092357]
656209
656136
-
Cys
GCA
-
¡û
>C231315048
CP092358
Betaproteobacteria
Wielerella bovis 09LB414 [CP092358]
608378
608305
-
Cys
GCA
-
¡û
>C231315107
CP092359
Betaproteobacteria
Wielerella bovis 08LB461 [CP092359]
614206
614133
-
Cys
GCA
-
¡û
>C231315166
CP092360
Betaproteobacteria
Wielerella bovis 07LB258 [CP092360]
662244
662171
-
Cys
GCA
-
¡û
>C231315197
CP092361
Betaproteobacteria
Wielerella bovis CCUG 44465 [CP092361]
641934
642007
+
Cys
GCA
-
¡û
>C241092668
CP045141
Betaproteobacteria
Kingella kingae F41215CHC [CP045141]
622159
622232
+
Cys
GCA
-
¡û
>C241141665
CP050135
Betaproteobacteria
Kingella kingae ATCC 23331 [CP050135]
707312
707385
+
Cys
GCA
-
¡û
>C241141717
CP050136
Betaproteobacteria
Kingella kingae ATCC 23332 [CP050136]
601453
601526
+
Cys
GCA
-
¡û
>C241178181
CP059564
Betaproteobacteria
Alysiella filiformis DSM 16848 [CP059564]
956427
956500
+
Cys
GCA
-
¡û
>W11114062
ADCY01000014
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [ADCY]
8219
8292
+
Cys
GCA
[ENA]
¡û
>W11151255
AEWV01000015
Betaproteobacteria
Kingella denitrificans ATCC 33394 [AEWV]
125599
125672
+
Cys
GCA
[ENA]
¡û
>W11163373
AFHS01000026
Betaproteobacteria
Kingella kingae ATCC 23330 [AFHS]
4256
4329
+
Cys
GCA
[ENA]
¡û
>C161106917
LN869922
Betaproteobacteria
Kingella kingae KWG1 [LN869922]
1715388
1715315
-
Cys
GCA
-
¡û
>W121060767
AJGB01000038
Betaproteobacteria
Kingella kingae PYKK081 [AJGB]
2654
2581
-
Cys
GCA
[ENA]
¡û
>W121110606
ALIJ01000096
Betaproteobacteria
Kingella kingae 11220434 [ALIJ]
762
689
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK