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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44851 (57 seq.)
>W1711503795
MKTY01000012
Bacteroidota
Sphingobacteriales bacterium 46-32 [MKTY]
63498
63586
+
Leu
TAA
[ENA]
¡û
>WENV181386942
OFRL01026052
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
545
459
-
Leu
TAA
[ENA]
¡û
>WENV181402301
OFTY01000485
[OFTY] sludge metagenome; sludge
3552
3638
+
Leu
TAA
[ENA]
¡û
>WENV170650552
JRYE01003520
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
2825
2911
+
Leu
TAA
[ENA]
¡û
>WENV170954726
MJUI01035508
[MJUI] soil metagenome; viral particles from soil sample MG3
262
176
-
Leu
TAA
[ENA]
¡û
>WENV170980742
MWVT01000181
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
3334
3246
-
Leu
TAA
[ENA]
¡û
>WENV170980753
MWVT01000258
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
577
491
-
Leu
TAA
[ENA]
¡û
>WENV170981171
MWVT01035906
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
752
666
-
Leu
TAA
[ENA]
¡û
>WENV170981455
MWVT01096403
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
518
430
-
Leu
TAA
[ENA]
¡û
>WENV170981918
MWVT01259879
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
236
148
-
Leu
TAA
[ENA]
¡û
>WENV170982037
MWVU01005419
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
785
871
+
Leu
TAA
[ENA]
¡û
>WENV170982238
MWVU01041902
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
141
53
-
Leu
TAA
[ENA]
¡û
>WENV170982559
MWVU01143737
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
397
309
-
Leu
TAA
[ENA]
¡û
>WENV170984267
MWVV01217296
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
139
53
-
Leu
TAA
[ENA]
¡û
>WENV170984865
MWVW01001048
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
726
812
+
Leu
TAA
[ENA]
¡û
>WENV170984869
MWVW01001115
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
4873
4961
+
Leu
TAA
[ENA]
¡û
>WENV170984930
MWVW01003635
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
518
430
-
Leu
TAA
[ENA]
¡û
>WENV170985042
MWVW01013453
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
795
707
-
Leu
TAA
[ENA]
¡û
>WENV170985107
MWVW01023003
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
717
631
-
Leu
TAA
[ENA]
¡û
>WENV170985154
MWVW01031369
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
145
231
+
Leu
TAA
[ENA]
¡û
>WENV170985575
MWVW01154556
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
148
234
+
Leu
TAA
[ENA]
¡û
>WENV170985672
MWVX01000398
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
41
127
+
Leu
TAA
[ENA]
¡û
>WENV170985734
MWVX01001283
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
7830
7916
+
Leu
TAA
[ENA]
¡û
>WENV170985838
MWVX01004109
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1806
1892
+
Leu
TAA
[ENA]
¡û
>WENV170986023
MWVX01011635
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
2285
2373
+
Leu
TAA
[ENA]
¡û
>WENV170986376
MWVX01034893
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
41
127
+
Leu
TAA
[ENA]
¡û
>WENV170986526
MWVX01049117
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
414
326
-
Leu
TAA
[ENA]
¡û
>WENV170986738
MWVX01073107
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
929
841
-
Leu
TAA
[ENA]
¡û
>WENV170986896
MWVX01093887
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
292
378
+
Leu
TAA
[ENA]
¡û
>WENV170987436
MWVX01190264
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
33
119
+
Leu
TAA
[ENA]
¡û
>WENV170987641
MWVX01235756
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
516
430
-
Leu
TAA
[ENA]
¡û
>WENV170987850
MWVX01293828
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
403
489
+
Leu
TAA
[ENA]
¡û
>WENV170988133
MWVX01379274
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
147
233
+
Leu
TAA
[ENA]
¡û
>WENV170988826
MWVY01011944
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
99
13
-
Leu
TAA
[ENA]
¡û
>WENV170989226
MWVZ01005066
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
981
1069
+
Leu
TAA
[ENA]
¡û
>WENV170989713
MWVZ01086801
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
152
66
-
Leu
TAA
[ENA]
¡û
>WENV170990290
MWWA01000470
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
6148
6234
+
Leu
TAA
[ENA]
¡û
>WENV170990430
MWWA01005805
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
2149
2237
+
Leu
TAA
[ENA]
¡û
>WENV170990604
MWWA01021907
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
230
144
-
Leu
TAA
[ENA]
¡û
>WENV170991139
MWWA01120131
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
123
211
+
Leu
TAA
[ENA]
¡û
>WENV170991689
MWWA01287203
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
319
231
-
Leu
TAA
[ENA]
¡û
>WENV170992030
MWWA01412873
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
124
38
-
Leu
TAA
[ENA]
¡û
>WENV170992035
MWWB01000004
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
17682
17596
-
Leu
TAA
[ENA]
¡û
>WENV170992137
MWWB01002837
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
3348
3436
+
Leu
TAA
[ENA]
¡û
>WENV170992262
MWWB01009873
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
253
165
-
Leu
TAA
[ENA]
¡û
>WENV170992284
MWWB01012619
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
151
237
+
Leu
TAA
[ENA]
¡û
>WENV170992385
MWWB01022969
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
219
133
-
Leu
TAA
[ENA]
¡û
>WENV170994763
MWWE01044675
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
517
603
+
Leu
TAA
[ENA]
¡û
>WENV170995025
MWWE01120913
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
226
312
+
Leu
TAA
[ENA]
¡û
>WENV170995303
MWWF01000290
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1336
1422
+
Leu
TAA
[ENA]
¡û
>WENV170996876
MWWG01001228
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
1329
1241
-
Leu
TAA
[ENA]
¡û
>WENV170997629
MWWG01216302
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
359
273
-
Leu
TAA
[ENA]
¡û
>WENV170999263
MWWK01012253
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
47
135
+
Leu
TAA
[ENA]
¡û
>WENV170999342
MWWK01028884
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
161
249
+
Leu
TAA
[ENA]
¡û
>WENV170999528
MWWK01079486
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
413
327
-
Leu
TAA
[ENA]
¡û
>WENV077179
AAFX01001702
Soil microbial communities from Minnesota Farm
1457
1545
+
Leu
TAA
[ENA]
>W1710583444
FQUU01000002
Bacteroidota
Flavisolibacter ginsengisoli DSM 18119 [FQUU]
72597
72509
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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