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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448546 (41 seq.)
>W131164719
ARBA01000001
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
260074
260147
+
Gly
CCC
[ENA]
¡û
>W1711224657
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
119408
119335
-
Gly
CCC
[ENA]
¡û
>W131224219
AUCQ01000001
Betaproteobacteria
Comamonas composti DSM 21721 [AUCQ]
101776
101703
-
Gly
CCC
[ENA]
¡û
>W1712103046
NIOG01000016
Betaproteobacteria
Roseateles terrae [NIOG]
23874
23801
-
Gly
CCC
[ENA]
¡û
>WENV181190036
OEOF01417777
[OEOF] activated sludge metagenome; Activated Sludge
163
90
-
Gly
CCC
[ENA]
¡û
>WENV181842919
OGVT01041732
[OGVT] freshwater metagenome; freshwater
347
274
-
Gly
CCC
[ENA]
¡û
>WENV181843744
OGVU01057464
[OGVU] freshwater metagenome; freshwater
97
170
+
Gly
CCC
[ENA]
¡û
>WENV181852164
OGWF01006889
[OGWF] freshwater metagenome; freshwater
340
267
-
Gly
CCC
[ENA]
¡û
>WENV181857564
OGWO01014062
[OGWO] freshwater metagenome; freshwater
533
460
-
Gly
CCC
[ENA]
¡û
>WENV170558588
CXWL01079907
[CXWL] groundwater metagenome; biofilm material
4371
4444
+
Gly
CCC
[ENA]
¡û
>WENV170706321
LNAP01002067
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
21934
22007
+
Gly
CCC
[ENA]
¡û
>WENV170707186
LNAP01014611
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3344
3417
+
Gly
CCC
[ENA]
¡û
>WENV170961747
MLJW01000849
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
646
719
+
Gly
CCC
[ENA]
¡û
>W141819382
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
852823
852750
-
Gly
CCC
[ENA]
¡û
>C09107803
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
2508053
2507980
-
Gly
CCC
[Ensembl]
¡û
>W1910730023
MHBU01000008
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
21521
21594
+
Gly
CCC
[ENA]
¡û
>W1911623982
PQVH01000005
Betaproteobacteria
Methylotenera sp. La3113 [PQVH]
125698
125771
+
Gly
CCC
[ENA]
¡û
>W1810884635
QUMT01000002
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
23261
23188
-
Gly
CCC
[ENA]
¡û
>W1810889189
QURR01000001
Betaproteobacteria
Comamonas testosteroni SWCO2 [QURR]
159361
159434
+
Gly
CCC
[ENA]
¡û
>C151104078
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
1716370
1716443
+
Gly
CCC
[Ensembl]
¡û
>W2010863453
MHBU01000008
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
21521
21594
+
Gly
CCC
[ENA]
¡û
>W2011218937
PQVH01000005
Betaproteobacteria
Methylotenera sp. La3113 [PQVH]
125698
125771
+
Gly
CCC
[ENA]
¡û
>W2011693434
SSWX01000004
Betaproteobacteria
Lampropedia sp. YIM MLB12 [SSWX]
53024
53097
+
Gly
CCC
[ENA]
¡û
>W2011694170
STFG01000008
Betaproteobacteria
Lampropedia puyangensis 2-bin [STFG]
108188
108261
+
Gly
CCC
[ENA]
¡û
>ENV09000736
ABSP01025238
Freshwater sediment metagenome lwMethane_C1
326
399
+
Gly
CCC
[ENA]
¡û
>ENV09000935
ABSQ01000747
Freshwater sediment metagenome lwMethenol_C1
1459
1386
-
Gly
CCC
[ENA]
¡û
>ENV09001308
ABSR01001087
Freshwater sediment metagenome lwMethylamine_C1
562
635
+
Gly
CCC
[ENA]
¡û
>ENV09001323
ABSR01001407
Freshwater sediment metagenome lwMethylamine_C1
1077
1004
-
Gly
CCC
[ENA]
¡û
>ENV09001385
ABSR01004228
Freshwater sediment metagenome lwMethylamine_C1
8
81
+
Gly
CCC
[ENA]
¡û
>ENV09001415
ABSR01005896
Freshwater sediment metagenome lwMethylamine_C1
1736
1809
+
Gly
CCC
[ENA]
¡û
>ENV09001421
ABSR01006335
Freshwater sediment metagenome lwMethylamine_C1
314
387
+
Gly
CCC
[ENA]
¡û
>ENV09001602
ABSR01035887
Freshwater sediment metagenome lwMethylamine_C1
467
394
-
Gly
CCC
[ENA]
¡û
>W2110119582
CAJPFK010000004
Betaproteobacteria
Methylophilaceae bacterium [CAJPFK]
118689
118616
-
Gly
CCC
[ENA]
¡û
>W2110592203
JAHCDN010000001
Betaproteobacteria
Variovorax sp. PCZ-1 [JAHCDN]
1498005
1497932
-
Gly
CCC
[ENA]
¡û
>C211014246
AP024110
Betaproteobacteria
Methyloradius palustris Zm11 [AP024110]
2725700
2725627
-
Gly
CCC
-
¡û
>C211369747
CP079745
Betaproteobacteria
Comamonas aquatica B1 [CP079745]
2362534
2362461
-
Gly
CCC
-
¡û
>C10109359
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
3027568
3027495
-
Gly
CCC
[Ensembl]
¡û
>W1511433533
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
1862081
1862154
+
Gly
CCC
[ENA]
¡û
>WENV058619
AACY023335826
Marine microbial communities from Global Ocean Sampling (GOS)
1649
1576
-
Gly
CCC
[ENA]
>W1611008621
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
119408
119335
-
Gly
CCC
[ENA]
¡û
>W1710524792
FNJA01000001
Betaproteobacteria
Rhodoferax sp. OV413 OV413 [FNJA]
171887
171960
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK