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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448581 (39 seq.)
>WENV180038895
LLBY010011430
[LLBY] soil metagenome; soil from tomato rhizosphere
29849
29920
+
Cys
GCA
[ENA]
¡û
>WENV180040662
LLBZ010005281
[LLBZ] soil metagenome; soil from tomato rhizosphere
51681
51610
-
Cys
GCA
[ENA]
¡û
>WENV180291860
OBIV01201339
[OBIV] soil metagenome; Clay
388
317
-
Cys
GCA
[ENA]
¡û
>WENV182559668
OJDQ01000968
[OJDQ] seawater metagenome; Sea water
93
22
-
Cys
GCA
[ENA]
¡û
>WENV182563905
OJED01002283
[OJED] seawater metagenome; Sea water
2516
2587
+
Cys
GCA
[ENA]
¡û
>WENV182586820
OJHK01006215
[OJHK] seawater metagenome; Sea water
2553
2482
-
Cys
GCA
[ENA]
¡û
>WENV182591534
OJIO01000298
[OJIO] seawater metagenome; Sea water
4704
4633
-
Cys
GCA
[ENA]
¡û
>WENV183749096
PPFU01119250
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2379
2450
+
Cys
GCA
[ENA]
¡û
>WENV170654490
JRYL01000058
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
242681
242754
+
Cys
GCA
[ENA]
¡û
>C191023083
CP022985
Bacteroidota
Mariniflexile sp. TRM1-10 [CP022985]
1737599
1737670
+
Cys
GCA
-
¡û
>W141563373
JHZY01000004
Bacteroidota
Leeuwenhoekiella sp. MAR_2009_132 Hel_I_48 [JHZY]
1440974
1440901
-
Cys
GCA
[ENA]
¡û
>W1910923761
NIHE01000001
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
808485
808556
+
Cys
GCA
[ENA]
¡û
>W1910935638
NIXN01000001
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
531611
531540
-
Cys
GCA
[ENA]
¡û
>W1911708454
QOVM01000001
Bacteroidota
Leeuwenhoekiella aequorea LMG 22550 [QOVM]
140490
140419
-
Cys
GCA
[ENA]
¡û
>W1810161371
PJEO01000017
Bacteroidota
Confluentibacter flavum 3B [PJEO]
165494
165565
+
Cys
GCA
[ENA]
¡û
>W1810679249
QKPO01000011
Bacteroidota
Confluentibacter sediminis DSL-48 [QKPO]
92116
92045
-
Cys
GCA
[ENA]
¡û
>W2010598127
JABFHO010000001
Bacteroidota
Winogradskyella sp. Z963 [JABFHO]
833210
833139
-
Cys
GCA
[ENA]
¡û
>W2010970282
NIHE01000001
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
808485
808556
+
Cys
GCA
[ENA]
¡û
>W2010982713
NIXN01000001
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
531611
531540
-
Cys
GCA
[ENA]
¡û
>W2011281619
QOVM01000001
Bacteroidota
Leeuwenhoekiella aequorea LMG 22550 [QOVM]
140490
140419
-
Cys
GCA
[ENA]
¡û
>W2011618938
SLUP01000001
Bacteroidota
Mariniflexile fucanivorans DSM 18792 [SLUP]
760188
760259
+
Cys
GCA
[ENA]
¡û
>W2011665427
SORL01000008
Bacteroidota
Algibacter wandonensis CECT 8301 [SORL]
551387
551316
-
Cys
GCA
[ENA]
¡û
>W2012102705
VOGY01000003
Bacteroidota
Algibacter sp. H164 [VOGY]
85580
85651
+
Cys
GCA
[ENA]
¡û
>W2012131007
VSKK01000001
Bacteroidota
Bizionia myxarmorum ADA-4 [VSKK]
620575
620502
-
Cys
GCA
[ENA]
¡û
>W2012205563
VXDE01000002
Bacteroidota
Algibacter wandonensis WS-MY22 [VXDE]
551400
551329
-
Cys
GCA
[ENA]
¡û
>W2012426096
WRPN01000007
Bacteroidota
Mariniflexile sp. M5A1M [WRPN]
69161
69232
+
Cys
GCA
[ENA]
¡û
>W2012441747
WUDS01000003
Bacteroidota
Algibacter wandonensis KCTC 32381 [WUDS]
67189
67118
-
Cys
GCA
[ENA]
¡û
>W2110022867
BMFQ01000001
Bacteroidota
Bizionia arctica CGMCC 1.12751 [BMFQ]
657693
657764
+
Cys
GCA
[ENA]
¡û
>W2110026070
BMIC01000001
Bacteroidota
Aquaticitalea lipolytica CGMCC 1.15295 [BMIC]
1481511
1481582
+
Cys
GCA
[ENA]
¡û
>W2110556614
JAGJCB010000002
Bacteroidota
Mariniflexile gromovii KCTC 12570 [JAGJCB]
372838
372909
+
Cys
GCA
[ENA]
¡û
>W1510012889
BBNQ01000005
Bacteroidota
Algibacter lectus JCM 19300 [BBNQ]
238545
238618
+
Cys
GCA
[ENA]
¡û
>W1510013005
BBNU01000003
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
256264
256191
-
Cys
GCA
[ENA]
¡û
>C241115051
CP047029
Bacteroidota
Algibacter sp. L1A34 [CP047029]
1368135
1368064
-
Cys
GCA
-
¡û
>C241115088
CP047030
Bacteroidota
Algibacter sp. L3A6 [CP047030]
1524232
1524161
-
Cys
GCA
-
¡û
>C241155585
CP053352
Bacteroidota
Winogradskyella helgolandensis Z354 [CP053352]
4062379
4062450
+
Cys
GCA
-
¡û
>W1511222479
JNGS01000014
Bacteroidota
Bizionia psychrotolerans PB-M7 [JNGS]
297
224
-
Cys
GCA
[ENA]
¡û
>W11176846
AFXZ01000034
Bacteroidota
Bizionia argentinensis JUB59 [AFXZ]
23513
23586
+
Cys
GCA
[ENA]
¡û
>C161047094
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
2657968
2657895
-
Cys
GCA
[Ensembl]
¡û
>W1710558022
FOLN01000003
Bacteroidota
Algibacter lectus [FOLN]
92331
92404
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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