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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44859 (16 seq.)
>WENV180292592
OBIV01528041
[OBIV] soil metagenome; Clay
7
93
+
Leu
TAA
[ENA]
¡û
>WENV170984693
MWVV01396396
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
175
86
-
Leu
TAA
[ENA]
¡û
>WENV170984803
MWVW01000099
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
19216
19128
-
Leu
TAA
[ENA]
¡û
>WENV170984867
MWVW01001106
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
2352
2438
+
Leu
TAA
[ENA]
¡û
>WENV170984880
MWVW01001368
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
4270
4184
-
Leu
TAA
[ENA]
¡û
>WENV170984996
MWVW01008621
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1125
1213
+
Leu
TAA
[ENA]
¡û
>WENV170986497
MWVX01044856
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1028
1116
+
Leu
TAA
[ENA]
¡û
>WENV170986659
MWVX01062181
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
893
979
+
Leu
TAA
[ENA]
¡û
>WENV170986986
MWVX01106987
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
784
696
-
Leu
TAA
[ENA]
¡û
>WENV170987417
MWVX01188337
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
522
434
-
Leu
TAA
[ENA]
¡û
>WENV170987702
MWVX01249855
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
271
185
-
Leu
TAA
[ENA]
¡û
>WENV170988623
MWVX01560208
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
167
255
+
Leu
TAA
[ENA]
¡û
>WENV170995370
MWWF01002557
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
3158
3244
+
Leu
TAA
[ENA]
¡û
>WENV170995440
MWWF01007780
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1686
1598
-
Leu
TAA
[ENA]
¡û
>WENV170995821
MWWF01068228
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
223
137
-
Leu
TAA
[ENA]
¡û
>WENV170996521
MWWF01308091
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
203
289
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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