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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44872 (4 seq.)
>WENV170989781
MWVZ01101191
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
28
114
+
Leu
TAA
[ENA]
¡û
>WENV170990226
MWWA01000006
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
37981
37895
-
Leu
TAA
[ENA]
¡û
>W1911647260
QAJI01000006
Bacteroidota
Taibaiella sp. KBW10 [QAJI]
11308
11394
+
Leu
TAA
[ENA]
¡û
>W2011235244
QAJI01000006
Bacteroidota
Taibaiella sp. KBW10 [QAJI]
11308
11394
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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