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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448776 (50 seq.)
>W1711666774
MRCG01000020
Cyanobacteriota
Phormidium tenue NIES-30 [MRCG]
63817
63887
+
Gly
TCC
[ENA]
¡û
>w023453
AAXW01000017
Cyanobacteriota
Crocosphaera chwakensis CCY0110 [AAXW]
95533
95460
-
Gly
TCC
[ENA]
¡û
>W141004308
AFXD01000055
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
111974
112044
+
Gly
TCC
[ENA]
¡û
>w003601
AADV02000003
Cyanobacteriota
Crocosphaera watsonii WH 8501 [AADV]
73966
73893
-
Gly
TCC
[ENA]
¡û
>W08010888
ABRV01000032
Cyanobacteriota
Synechococcus sp. PCC 7335 [ABRV]
242620
242690
+
Gly
TCC
[ENA]
¡û
>W141240120
CAFN01000045
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
1346
1276
-
Gly
TCC
[ENA]
¡û
>C08000545
CP000828
Cyanobacteriota
Acaryochloris marina MBIC11017 [CP000828]
4814711
4814781
+
Gly
TCC
[Ensembl]
¡û
>C08003956
CP000806
Cyanobacteriota
Crocosphaera subtropica ATCC 51142 [CP000806, CP000807]
43196
43266
+
Gly
TCC
[Ensembl]
¡û
>WENV183748632
PPFU01062246
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1127
1057
-
Gly
TCC
[ENA]
¡û
>WENV183750503
PPFU01313560
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1085
1015
-
Gly
TCC
[ENA]
¡û
>WENV170307055
CESJ01112573
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
308
237
-
Gly
TCC
[ENA]
¡û
>WENV170325985
CEST01081187
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3462
3533
+
Gly
TCC
[ENA]
¡û
>WENV021373
AACY020566169
Marine microbial communities from Global Ocean Sampling (GOS)
233
306
+
Gly
TCC
[ENA]
>WENV170919463
MDTF01009183
[MDTF] marine metagenome; seawater
965
894
-
Gly
TCC
[ENA]
¡û
>CHL1810019289
KR709240
Stramenopiles
Pseudo-nitzschia multiseries (KR709240)
82446
82376
-
Gly
TCC
[ENA]
¡û
>CHL1810059319
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
40976
40905
-
Gly
TCC
[ENA]
¡û
>CHL1810059352
MG755798
Stramenopiles
Attheya longicornis (MG755798)
17756
17827
+
Gly
TCC
[ENA]
¡û
>CHL1810059404
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
9468
9538
+
Gly
TCC
[ENA]
¡û
>CHL1810059454
MG755801
Stramenopiles
Triceratium dubium (MG755801)
36267
36196
-
Gly
TCC
[ENA]
¡û
>C181169662
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
3275652
3275722
+
Gly
TCC
-
¡û
>W09113154
ABYK01000012
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
97038
97108
+
Gly
TCC
[ENA]
¡û
>W09134558
ACSK01001411
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
204
134
-
Gly
TCC
[ENA]
¡û
>CHL090102719
EF067920
stramenopiles
Phaeodactylum tricornutum
9582
9652
+
Gly
TCC
[ENA]
¡û
>W1810185575
PKGD01000112
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
7989
8059
+
Gly
TCC
[ENA]
¡û
>W2010088448
BIMW01000090
Cyanobacteriota
Arthrospira platensis NIES-46 [BIMW]
79613
79683
+
Gly
TCC
[ENA]
¡û
>W2010149004
CAACVJ010000292
Cyanobacteriota
Hyella patelloides LEGE 07179 [CAACVJ]
5880
5951
+
Gly
TCC
[ENA]
¡û
>W2011391936
RCBZ01000074
Cyanobacteriota
Okeania hirsuta PAP21Jun06-1 [RCBZ]
27746
27676
-
Gly
TCC
[ENA]
¡û
>W2110217300
JACGXW010000199
Cyanobacteriota
Limnospira fusiformis KN [JACGXW]
888
818
-
Gly
TCC
[ENA]
¡û
>W2110228394
JACJPJ010000079
Cyanobacteriota
Oculatella sp. FACHB-28 [JACJPJ]
143462
143392
-
Gly
TCC
[ENA]
¡û
>W2110232816
JACJSX010000166
Cyanobacteriota
Arthrospira platensis FACHB-971 [JACJSX]
924
854
-
Gly
TCC
[ENA]
¡û
>W2110233452
JACJTL010000009
Cyanobacteriota
Arthrospira platensis FACHB-439 [JACJTL]
79307
79377
+
Gly
TCC
[ENA]
¡û
>W2110233739
JACJTS010000184
Cyanobacteriota
Arthrospira platensis FACHB-835 [JACJTS]
5790
5860
+
Gly
TCC
[ENA]
¡û
>W2110262176
JACSWC010000041
Cyanobacteriota
Halomicronema sp. CCY15110 [JACSWC]
142
212
+
Gly
TCC
[ENA]
¡û
>W2110310914
JADEWC010000038
Cyanobacteriota
Cyanobacterium stanieri LEGE 03274 [JADEWC]
20563
20633
+
Gly
TCC
[ENA]
¡û
>W2110311488
JADEWQ010000001
Cyanobacteriota
Pleurocapsales cyanobacterium LEGE 06147 [JADEWQ]
29950
29880
-
Gly
TCC
[ENA]
¡û
>W2110312657
JADEXO010000038
Cyanobacteriota
cf. Phormidesmis sp. LEGE 11477 [JADEXO]
10569
10499
-
Gly
TCC
[ENA]
¡û
>W2110312779
JADEXQ010000121
Cyanobacteriota
filamentous cyanobacterium LEGE 11480 [JADEXQ]
1366
1296
-
Gly
TCC
[ENA]
¡û
>W2110361118
JADOES010000009
Cyanobacteriota
Leptothoe spongobia TAU-MAC 1115 [JADOES]
87647
87577
-
Gly
TCC
[ENA]
¡û
>C201246886
CP051185
Cyanobacteriota
Limnospira fusiformis SAG 85.79 [CP051185]
3272750
3272820
+
Gly
TCC
-
¡û
>C211234228
CP066886
Cyanobacteriota
Arthrospira sp. PCC 9108 [CP066886]
3054439
3054509
+
Gly
TCC
-
¡û
>C231030937
CP019998
Cyanobacteriota
Arthrospira platensis C1 [CP019998]
3939964
3940034
+
Gly
TCC
-
¡û
>W10111320
ADDH01000001
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
40211
40141
-
Gly
TCC
[ENA]
¡û
>C231129807
CP073041
Cyanobacteriota
Woronichinia naegeliana WA131 [CP073041]
341943
342014
+
Gly
TCC
-
¡û
>C10114699
CP001842
Cyanobacteriota
Candidatus Atelocyanobacterium thalassa isolate ALOHA [CP001842]
256931
257001
+
Gly
TCC
[Ensembl]
¡û
>W11114263
ADDH01000001
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
40211
40141
-
Gly
TCC
[ENA]
¡û
>W11181443
AGJC01000001
Cyanobacteriota
Crocosphaera subtropica ATCC 51472 [AGJC]
127177
127107
-
Gly
TCC
[ENA]
¡û
>C161001515
AP014815
Cyanobacteriota
Geminocystis sp. NIES-3708 [AP014815]
3356831
3356761
-
Gly
TCC
[Ensembl]
¡û
>C161049390
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
2973445
2973515
+
Gly
TCC
-
¡û
>C161103166
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
2379537
2379467
-
Gly
TCC
-
¡û
>C131010171
CP003940
Cyanobacteriota
Cyanobacterium stanieri PCC 7202 [CP003940]
646803
646873
+
Gly
TCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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