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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448844 (44 seq.)
>W131229123
AUGN01000011
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
99729
99802
+
Gln
TTG
[ENA]
¡û
>W1711622848
MPGM01000003
Bacteroidota
Flavobacteriaceae bacterium A100 [MPGM]
81843
81770
-
Gln
TTG
[ENA]
¡û
>w015436
AAPD01000001
Bacteroidota
Flavobacteria bacterium BBFL7 [AAPD]
216769
216694
-
Gln
TTG
[ENA]
¡û
>WENV180594056
OCOY01021968
[OCOY] marine metagenome; ENVO:00002010
601
530
-
Gln
TTG
[ENA]
¡û
>WENV181322789
OFKU01020564
[OFKU] marine metagenome; sea ice
229
158
-
Gln
TTG
[ENA]
¡û
>W141238395
BBLG01000005
Bacteroidota
Nonlabens ulvanivorans [BBLG]
19820
19891
+
Gln
TTG
[ENA]
¡û
>W141238773
BBMJ01000005
Bacteroidota
Nonlabens ulvanivorans [BBMJ]
100632
100703
+
Gln
TTG
[ENA]
¡û
>W141238799
BBMK01000001
Bacteroidota
Nonlabens ulvanivorans [BBMK]
212247
212176
-
Gln
TTG
[ENA]
¡û
>W141238855
BBMM01000004
Bacteroidota
Nonlabens ulvanivorans [BBMM]
19787
19858
+
Gln
TTG
[ENA]
¡û
>WENV170783417
MAAC01016718
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
30690
30761
+
Gln
TTG
[ENA]
¡û
>W141805206
JPJI01000032
Bacteroidota
Nonlabens ulvanivorans [JPJI]
887918
887989
+
Gln
TTG
[ENA]
¡û
>W1910785619
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
2880089
2880160
+
Gln
TTG
[ENA]
¡û
>W1910785727
MQVW01000027
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
479137
479208
+
Gln
TTG
[ENA]
¡û
>W1910805317
MTPW01000001
Bacteroidota
Nonlabens arenilitoris KCTC 32109 [MTPW]
1008402
1008331
-
Gln
TTG
[ENA]
¡û
>W1810296272
PTJE01000001
Bacteroidota
Nonlabens xylanidelens DSM 16809 [PTJE]
843230
843301
+
Gln
TTG
[ENA]
¡û
>W1810356556
PVNA01000001
Bacteroidota
Nonlabens ulvanivorans DSM 22727 [PVNA]
890077
890148
+
Gln
TTG
[ENA]
¡û
>W1810685972
QKZR01000008
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
7435
7506
+
Gln
TTG
[ENA]
¡û
>W2010559814
JAASQL010000001
Bacteroidota
Wenyingzhuangia heitensis DSM 101599 [JAASQL]
1479270
1479341
+
Gln
TTG
[ENA]
¡û
>W2010567625
JAATJG010000012
Bacteroidota
Wenyingzhuangia aestuarii DSM 105044 [JAATJG]
110565
110494
-
Gln
TTG
[ENA]
¡û
>W2010894146
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
2880089
2880160
+
Gln
TTG
[ENA]
¡û
>W2010894254
MQVW01000027
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
479137
479208
+
Gln
TTG
[ENA]
¡û
>W2010913029
MTPW01000001
Bacteroidota
Nonlabens arenilitoris KCTC 32109 [MTPW]
1008402
1008331
-
Gln
TTG
[ENA]
¡û
>W2012011080
VEVQ02000014
Bacteroidota
Flavobacterium jejuense EC11 [VEVQ]
59414
59485
+
Gln
TTG
[ENA]
¡û
>W2110021460
BMEN01000002
Bacteroidota
Wenyingzhuangia marina CGMCC 1.12162 [BMEN]
188484
188555
+
Gln
TTG
[ENA]
¡û
>W2110315276
JADFCO010000060
Bacteroidota
Nonlabens antarcticus JCM 14068 [JADFCO]
123223
123152
-
Gln
TTG
[ENA]
¡û
>W2110330958
JADKYU010000037
Bacteroidota
Nonlabens mediterrranea TC4 [JADKYU]
187
116
-
Gln
TTG
[ENA]
¡û
>W2110330972
JADKYU010000370
Bacteroidota
Nonlabens mediterrranea TC4 [JADKYU]
658
587
-
Gln
TTG
[ENA]
¡û
>W2110362410
JADOTV010000001
Bacteroidota
Aureivirga sp. CE67 [JADOTV]
887174
887103
-
Gln
TTG
[ENA]
¡û
>W1510012977
BBNT01000001
Bacteroidota
Nonlabens ulvanivorans JCM 19275 [BBNT]
124719
124648
-
Gln
TTG
[ENA]
¡û
>C231270773
CP090145
Bacteroidota
Flavobacterium sediminilitoris YSM-43 [CP090145]
1674840
1674911
+
Gln
TTG
-
¡û
>C231293505
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
1965786
1965857
+
Gln
TTG
-
¡û
>C231293506
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
1966031
1966102
+
Gln
TTG
-
¡û
>C231524718
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
1939830
1939901
+
Gln
TTG
-
¡û
>C231524719
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
1940075
1940146
+
Gln
TTG
-
¡û
>C231525304
CP110010
Bacteroidota
Flavobacterium sp. N501239 [CP110010]
1674825
1674896
+
Gln
TTG
-
¡û
>C241329156
CP136694
Bacteroidota
Nonlabens ulvanivorans CI.11.F.A3 [CP136694]
2311960
2311889
-
Gln
TTG
-
¡û
>W1511526845
JYGZ01000004
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
97338
97265
-
Gln
TTG
[ENA]
¡û
>W11170359
AFPK01000044
Bacteroidota
Ochrovirga pacifica S85 [AFPK]
29017
28944
-
Gln
TTG
[ENA]
¡û
>C161000290
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
1148550
1148621
+
Gln
TTG
[Ensembl]
¡û
>C161068715
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
2242582
2242509
-
Gln
TTG
[Ensembl]
¡û
>C131001085
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
1862923
1862994
+
Gln
TTG
[Ensembl]
¡û
>W1610584174
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
891350
891421
+
Gln
TTG
[ENA]
¡û
>W1710586992
FQXQ01000002
Bacteroidota
Wenyingzhuangia marina [FQXQ]
519482
519409
-
Gln
TTG
[ENA]
¡û
>W1710703322
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
891350
891421
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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