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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448939 (82 seq.)
>W1710988604
LPVJ01000018
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
29497
29571
+
Gly
GCC
[ENA]
¡û
>W1710988640
LPVJ01000070
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
177955
177881
-
Gly
GCC
[ENA]
¡û
>W1711082800
LSUQ01000005
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
65223
65297
+
Gly
GCC
[ENA]
¡û
>W1711082817
LSUQ01000016
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
37553
37479
-
Gly
GCC
[ENA]
¡û
>W1711184300
LWLU01000301
Bacillota
Bacillaceae bacterium G1 [LWLU]
4089
4015
-
Gly
GCC
[ENA]
¡û
>W1711259332
LYVF01000127
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
13617
13543
-
Gly
GCC
[ENA]
¡û
>C171109135
CP020557
Bacillota
Paenibacillus larvae subsp. pulvifaciens SAG 10367 [CP020557]
2059305
2059231
-
Gly
GCC
-
¡û
>C171109151
CP020557
Bacillota
Paenibacillus larvae subsp. pulvifaciens SAG 10367 [CP020557]
1943750
1943676
-
Gly
GCC
-
¡û
>W131177546
ARKW01000019
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
1995
1921
-
Gly
GCC
[ENA]
¡û
>W131177558
ARKW01000038
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
6776
6705
-
Gly
GCC
[ENA]
¡û
>W131177568
ARKW01000042
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
5136
5062
-
Gly
GCC
[ENA]
¡û
>W131177587
ARKW01000110
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
49465
49391
-
Gly
GCC
[ENA]
¡û
>W131177601
ARKW01000145
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
4945
5016
+
Gly
GCC
[ENA]
¡û
>C018184
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
969584
969658
+
Gly
GCC
[Ensembl]
¡û
>C018196
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
1525948
1525874
-
Gly
GCC
[Ensembl]
¡û
>WENV180991320
ODVN01044169
[ODVN] human metagenome; G_DNA_Tongue dorsum
46
120
+
Gly
GCC
[ENA]
¢þ
>WENV181231624
OFEK01043341
[OFEK] activated sludge metagenome; Anaerobic digester
524
450
-
Gly
GCC
[ENA]
¢þ
>WENV183552845
OOBJ01067907
[OOBJ] human gut metagenome; human gut
133
205
+
Gly
GCC
[ENA]
¢þ
>WENV170716514
LSQX01002080
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
114
188
+
Gly
GCC
[ENA]
¢þ
>WENV170716541
LSQX01002989
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
120
46
-
Gly
GCC
[ENA]
¢þ
>WENV170718941
LSQX01096001
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3234
3160
-
Gly
GCC
[ENA]
¢þ
>WENV170720117
LSQX01141829
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
28509
28583
+
Gly
GCC
[ENA]
¢þ
>WENV170722503
LSQX01232296
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
42790
42716
-
Gly
GCC
[ENA]
¢þ
>WENV170725440
LSQX01342504
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
114
188
+
Gly
GCC
[ENA]
¢þ
>C183000651
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
3821843
3821772
-
Gly
GCC
-
¡û
>C181124133
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
294682
294756
+
Gly
GCC
-
¡û
>C181124139
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
295186
295260
+
Gly
GCC
-
¡û
>C181124147
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
295847
295921
+
Gly
GCC
-
¡û
>C181124167
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
972887
972961
+
Gly
GCC
-
¡û
>C181124211
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
2016880
2016806
-
Gly
GCC
-
¡û
>W09108160
ABTB01000001
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [ABTB]
26084
26010
-
Gly
GCC
[ENA]
¡û
>W1910175718
BJCS01000005
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
393836
393762
-
Gly
GCC
[ENA]
¡û
>W1910175719
BJCS01000005
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
393580
393506
-
Gly
GCC
[ENA]
¡û
>W1910175733
BJCS01000008
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
661
732
+
Gly
GCC
[ENA]
¡û
>W1910175740
BJCS01000014
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
93902
93828
-
Gly
GCC
[ENA]
¡û
>W1910175761
BJCS01000020
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
57481
57407
-
Gly
GCC
[ENA]
¡û
>C143000016
CP003355
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 [CP003355]
3844923
3844849
-
Gly
GCC
[Ensembl]
¡û
>W1910505772
FYEP01000051
Bacillota
Paenibacillus tyrfis B69 [FYEP]
766
840
+
Gly
GCC
[ENA]
¡û
>C11100005
CP002902
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 [CP002902]
1085005
1085079
+
Gly
GCC
[Ensembl]
¡û
>W1511682184
LFJU01000013
Bacillota
Thermoactinomyces sp. CDF [LFJU]
2290
2216
-
Gly
GCC
[ENA]
¡û
>W11163523
AFHW01000065
Bacillota
Paenibacillus elgii B69 [AFHW]
26067
25993
-
Gly
GCC
[ENA]
¡û
>W11163531
AFHW01000124
Bacillota
Paenibacillus elgii B69 [AFHW]
46126
46052
-
Gly
GCC
[ENA]
¡û
>W11163546
AFHW01000178
Bacillota
Paenibacillus elgii B69 [AFHW]
22825
22751
-
Gly
GCC
[ENA]
¡û
>W121007214
AFZG01000002
Bacillota
Peptoanaerobacter stomatis CM5 [AFZG]
116394
116320
-
Gly
GCC
[ENA]
¡û
>W1610039924
AZTB01000027
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
10898
10824
-
Gly
GCC
[ENA]
¡û
>W1610039946
AZTB01000130
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
965
891
-
Gly
GCC
[ENA]
¡û
>W1610048370
BBEB01000069
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
751
825
+
Gly
GCC
[ENA]
¡û
>W1610048371
BBEB01000069
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
903
977
+
Gly
GCC
[ENA]
¡û
>W1610048392
BBEB01000086
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
19275
19201
-
Gly
GCC
[ENA]
¡û
>W1610048404
BBEB01000099
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
14988
14917
-
Gly
GCC
[ENA]
¡û
>W1610068857
BCRQ01000052
Bacillota
Alicyclobacillus sendaiensis NBRC 100866 [BCRQ]
4972
4898
-
Gly
GCC
[ENA]
¡û
>W1610615068
LGKI01000023
Bacillota
Thermoactinomyces vulgaris [LGKI]
649
575
-
Gly
GCC
[ENA]
¡û
>W1610615072
LGKI01000023
Bacillota
Thermoactinomyces vulgaris [LGKI]
253
179
-
Gly
GCC
[ENA]
¡û
>W1610615084
LGKI01000068
Bacillota
Thermoactinomyces vulgaris [LGKI]
284
358
+
Gly
GCC
[ENA]
¡û
>W1610615136
LGKI01000367
Bacillota
Thermoactinomyces vulgaris [LGKI]
32798
32724
-
Gly
GCC
[ENA]
¡û
>W1610615140
LGKI01000412
Bacillota
Thermoactinomyces vulgaris [LGKI]
190
264
+
Gly
GCC
[ENA]
¡û
>W1610843480
LPVJ01000018
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
29497
29571
+
Gly
GCC
[ENA]
¡û
>W1610843516
LPVJ01000070
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
177955
177881
-
Gly
GCC
[ENA]
¡û
>W1610921553
LSUQ01000005
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
65223
65297
+
Gly
GCC
[ENA]
¡û
>W1610921570
LSUQ01000016
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
37553
37479
-
Gly
GCC
[ENA]
¡û
>W1611021421
LYVF01000127
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
13617
13543
-
Gly
GCC
[ENA]
¡û
>W1710037069
AZTB01000027
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
10898
10824
-
Gly
GCC
[ENA]
¡û
>W1710037091
AZTB01000130
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
965
891
-
Gly
GCC
[ENA]
¡û
>W1710044880
BBEB01000069
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
751
825
+
Gly
GCC
[ENA]
¡û
>W1710044881
BBEB01000069
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
903
977
+
Gly
GCC
[ENA]
¡û
>W1710044902
BBEB01000086
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
19275
19201
-
Gly
GCC
[ENA]
¡û
>W1710044914
BBEB01000099
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
14988
14917
-
Gly
GCC
[ENA]
¡û
>W1710066230
BCRQ01000052
Bacillota
Alicyclobacillus sendaiensis NBRC 100866 [BCRQ]
4972
4898
-
Gly
GCC
[ENA]
¡û
>W1710084389
BDLR01000034
Bacillota
Carboxydocella sp. JDF658 [BDLR]
24999
24925
-
Gly
GCC
[ENA]
¡û
>W1710084401
BDLR01000037
Bacillota
Carboxydocella sp. JDF658 [BDLR]
14184
14258
+
Gly
GCC
[ENA]
¡û
>W1710084415
BDLR01000060
Bacillota
Carboxydocella sp. JDF658 [BDLR]
35379
35305
-
Gly
GCC
[ENA]
¡û
>W1710084434
BDLR01000181
Bacillota
Carboxydocella sp. JDF658 [BDLR]
17315
17389
+
Gly
GCC
[ENA]
¡û
>W1710601645
FUXM01000004
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
98473
98547
+
Gly
GCC
[ENA]
¡û
>W1710601666
FUXM01000031
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
16943
16869
-
Gly
GCC
[ENA]
¡û
>W1710601671
FUXM01000045
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
172
246
+
Gly
GCC
[ENA]
¡û
>W1710601680
FUXM01000055
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
11575
11501
-
Gly
GCC
[ENA]
¡û
>W1710601690
FUXM01000061
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
111
37
-
Gly
GCC
[ENA]
¡û
>W1710736314
LGKI01000023
Bacillota
Thermoactinomyces vulgaris [LGKI]
649
575
-
Gly
GCC
[ENA]
¡û
>W1710736318
LGKI01000023
Bacillota
Thermoactinomyces vulgaris [LGKI]
253
179
-
Gly
GCC
[ENA]
¡û
>W1710736330
LGKI01000068
Bacillota
Thermoactinomyces vulgaris [LGKI]
284
358
+
Gly
GCC
[ENA]
¡û
>W1710736382
LGKI01000367
Bacillota
Thermoactinomyces vulgaris [LGKI]
32798
32724
-
Gly
GCC
[ENA]
¡û
>W1710736386
LGKI01000412
Bacillota
Thermoactinomyces vulgaris [LGKI]
190
264
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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