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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.449027 (80 seq.)
>W1710875609
LMON01000006
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
122655
122728
+
Cys
GCA
[ENA]
¡û
>W1710916233
LNUV01000006
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
911310
911239
-
Cys
GCA
[ENA]
¡û
>W131172247
ARGU01000015
Actinomycetota
Arthrobacter sp. 161MFSha2.1 [ARGU]
14302
14375
+
Cys
GCA
[ENA]
¡û
>W1711466043
MJLT01000012
Actinomycetota
Arthrobacter sp. SW1 [MJLT]
50291
50218
-
Cys
GCA
[ENA]
¡û
>C000095
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
417046
416976
-
Cys
GCA
[Ensembl]
¡û
>WENV180016378
FSUT01000280
[FSUT] metagenome; soil
3202
3131
-
Cys
GCA
[ENA]
¡û
>WENV180016388
FSUT01000678
[FSUT] metagenome; soil
3350
3279
-
Cys
GCA
[ENA]
¡û
>WENV180025490
FTIP01020670
[FTIP] metagenome; soil
538
467
-
Cys
GCA
[ENA]
¡û
>W141216737
AZVC01000014
Actinomycetota
Paenarthrobacter nicotinovorans 231Sha2.1M6 [AZVC]
39250
39321
+
Cys
GCA
[ENA]
¡û
>W141217153
AZVJ01000009
Actinomycetota
Paenarthrobacter nicotinovorans 26Cvi1.1E [AZVJ]
158926
158855
-
Cys
GCA
[ENA]
¡û
>W141278882
JAFW01000001
Actinomycetota
Arthrobacter sp. 31Y [JAFW]
2865040
2864967
-
Cys
GCA
[ENA]
¡û
>C181065000
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
456127
456056
-
Cys
GCA
-
¡û
>W1910181603
BJMD01000032
Actinomycetota
Paenarthrobacter aurescens NBRC 12136 [BJMD]
26489
26562
+
Cys
GCA
[ENA]
¡û
>W1911566818
PCPC01000033
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
16729
16800
+
Cys
GCA
[ENA]
¡û
>W1911567576
PCPR01000015
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
52531
52602
+
Cys
GCA
[ENA]
¡û
>W1911798259
QYLP01000094
Actinomycetota
Arthrobacter sp. NEAU-SA2 [QYLP]
35895
35966
+
Cys
GCA
[ENA]
¡û
>W1810676824
QKMG01000008
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
221
148
-
Cys
GCA
[ENA]
¡û
>W1810786736
QRCU01000010
Actinomycetota
Arthrobacter silvisoli NEAU-SA1 [QRCU]
15189
15118
-
Cys
GCA
[ENA]
¡û
>W2010095252
BJMD01000032
Actinomycetota
Paenarthrobacter aurescens NBRC 12136 [BJMD]
26489
26562
+
Cys
GCA
[ENA]
¡û
>W2010309538
CABWLJ010000102
Actinomycetota
Arthrobacter sp. 9V [CABWLJ]
181570
181641
+
Cys
GCA
[ENA]
¡û
>W2010320652
CACSJJ010000039
Actinomycetota
Arthrobacter sp. 18067 [CACSJJ]
7452
7381
-
Cys
GCA
[ENA]
¡û
>W2010533697
JAAOXO010000002
Actinomycetota
Paenarthrobacter sp. MSM-2-10-13 [JAAOXO]
227808
227735
-
Cys
GCA
[ENA]
¡û
>W2010607998
JABMCX010000114
Actinomycetota
Paenarthrobacter sp. CM16 [JABMCX]
7949
8020
+
Cys
GCA
[ENA]
¡û
>W2010671031
JACCBL010000001
Actinomycetota
Arthrobacter cupressi DSM 24664 [JACCBL]
2317554
2317483
-
Cys
GCA
[ENA]
¡û
>W2011179102
PCPC01000033
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
16729
16800
+
Cys
GCA
[ENA]
¡û
>W2011179792
PCPR01000015
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
52531
52602
+
Cys
GCA
[ENA]
¡û
>W2011260427
QJQZ01000030
Actinomycetota
Paenarthrobacter nitroguajacolicus xwA8 [QJQZ]
29175
29246
+
Cys
GCA
[ENA]
¡û
>W2011260524
QJRB01000027
Actinomycetota
Paenarthrobacter nitroguajacolicus xwA3 [QJRB]
32159
32230
+
Cys
GCA
[ENA]
¡û
>W2011342108
QYLP01000094
Actinomycetota
Arthrobacter sp. NEAU-SA2 [QYLP]
35895
35966
+
Cys
GCA
[ENA]
¡û
>W2011553547
SDXQ01000006
Actinomycetota
Arthrobacter sp. TS-15 [SDXQ]
300981
301054
+
Cys
GCA
[ENA]
¡û
>W2011639621
SMRU01000006
Actinomycetota
Arthrobacter sp. JH1-1 [SMRU]
33680
33751
+
Cys
GCA
[ENA]
¡û
>W2011753661
SZVS01000007
Actinomycetota
Paenarthrobacter nicotinovorans SSBW5 [SZVS]
133099
133028
-
Cys
GCA
[ENA]
¡û
>W2012094651
VNFK01000012
Actinomycetota
Paenarthrobacter nitroguajacolicus SM1928 [VNFK]
86847
86918
+
Cys
GCA
[ENA]
¡û
>W2110035355
BMPM01000007
Actinomycetota
Paenarthrobacter histidinolovorans JCM 2520 [BMPM]
53914
53841
-
Cys
GCA
[ENA]
¡û
>W2110038712
BMRR01000021
Actinomycetota
Paenarthrobacter nicotinovorans JCM 3874 [BMRR]
14558
14631
+
Cys
GCA
[ENA]
¡û
>W2110326764
JADIXW010000005
Actinomycetota
Paenarthrobacter sp. GOM3 [JADIXW]
10544
10615
+
Cys
GCA
[ENA]
¡û
>W2110543272
JAGGPK010000018
Actinomycetota
Arthrobacter sp. ISL-30 [JAGGPK]
17357
17286
-
Cys
GCA
[ENA]
¡û
>W2110543581
JAGGPR010000003
Actinomycetota
Arthrobacter sp. ISL-95 [JAGGPR]
453517
453590
+
Cys
GCA
[ENA]
¡û
>W2110552615
JAGINL010000001
Actinomycetota
Pseudarthrobacter sp. PvP004 [JAGINL]
3620158
3620229
+
Cys
GCA
[ENA]
¡û
>W2110553430
JAGINZ010000001
Actinomycetota
Paenarthrobacter nicotinovorans DSM 420 [JAGINZ]
1586047
1586120
+
Cys
GCA
[ENA]
¡û
>W2110603299
JAHHIO010000006
Actinomycetota
Arthrobacter sp. GN70 [JAHHIO]
155059
154988
-
Cys
GCA
[ENA]
¡û
>C211024666
AP024631
Actinomycetota
Arthrobacter sp. NtRootA2 [AP024631]
400066
399993
-
Cys
GCA
-
¡û
>C211024718
AP024634
Actinomycetota
Arthrobacter sp. NtRootA4 [AP024634]
168924
168851
-
Cys
GCA
-
¡û
>C211024818
AP024637
Actinomycetota
Arthrobacter sp. NtRootC7 [AP024637]
400066
399993
-
Cys
GCA
-
¡û
>C211024870
AP024639
Actinomycetota
Arthrobacter sp. NtRootC45 [AP024639]
400066
399993
-
Cys
GCA
-
¡û
>C211024922
AP024641
Actinomycetota
Arthrobacter sp. NtRootD5 [AP024641]
400066
399993
-
Cys
GCA
-
¡û
>C211025026
AP024644
Actinomycetota
Arthrobacter sp. StoSoilB3 [AP024644]
383694
383621
-
Cys
GCA
-
¡û
>C211025079
AP024646
Actinomycetota
Arthrobacter sp. StoSoilB5 [AP024646]
386502
386431
-
Cys
GCA
-
¡û
>C211025212
AP024651
Actinomycetota
Arthrobacter sp. StoSoilB20 [AP024651]
496035
495964
-
Cys
GCA
-
¡û
>C211025266
AP024652
Actinomycetota
Arthrobacter sp. StoSoilB22 [AP024652]
411229
411156
-
Cys
GCA
-
¡û
>C211030290
CP014571
Actinomycetota
Arthrobacter sp. D5-1 [CP014571]
544267
544196
-
Cys
GCA
-
¡û
>C211093987
CP053549
Actinomycetota
Paenarthrobacter sp. YJN-D [CP053549]
1272827
1272754
-
Cys
GCA
-
¡û
>W2110708361
JAIWYX010000008
Actinomycetota
Arthrobacter sp. M4 [JAIWYX]
155922
155851
-
Cys
GCA
[ENA]
¡û
>W1510018505
BBUD01000445
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
2522
2451
-
Cys
GCA
[ENA]
¡û
>C231193800
CP084560
Actinomycetota
Arthrobacter sp. FW306-2-2C-D06B [CP084560]
295500
295429
-
Cys
GCA
-
¡û
>C231193902
CP084564
Actinomycetota
Arthrobacter sp. FW305-123 [CP084564]
422969
422896
-
Cys
GCA
-
¡û
>C231259797
CP089293
Actinomycetota
Paenarthrobacter nicotinovorans ATCC 49919 [CP089293]
383602
383529
-
Cys
GCA
-
¡û
>C231262699
CP089515
Actinomycetota
Paenarthrobacter nicotinovorans nic- [CP089515]
381538
381465
-
Cys
GCA
-
¡û
>C231461993
CP102950
Actinomycetota
Arthrobacter sp. CJ23 [CP102950]
405485
405414
-
Cys
GCA
-
¡û
>C231499814
CP104877
Actinomycetota
Paenarthrobacter sp. JL.01a [CP104877]
393129
393056
-
Cys
GCA
-
¡û
>C231622375
CP119414
Actinomycetota
Paenarthrobacter sp. Y-19 [CP119414]
4534545
4534472
-
Cys
GCA
-
¡û
>W2130031416
JAFNLL010000033
Actinomycetota
Arthrobacter sp. PO-11 [JAFNLL]
32620
32691
+
Cys
GCA
[ENA]
¡û
>C241248443
CP123579
Actinomycetota
Paenarthrobacter sp. OM7 [CP123579]
485070
484999
-
Cys
GCA
-
¡û
>C241328006
CP136562
Actinomycetota
Paenarthrobacter sp. GOM3 [CP136562]
341137
341066
-
Cys
GCA
-
¡û
>W1510641763
CVLG01000001
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
756687
756616
-
Cys
GCA
[ENA]
¡û
>W1511319604
JPZK01000010
Actinomycetota
Arthrobacter sp. MWB30 [JPZK]
9836
9763
-
Cys
GCA
[ENA]
¡û
>C161001315
AP014719
Actinomycetota
Arthrobacter sp. Hiyo8 [AP014719]
2182974
2183045
+
Cys
GCA
-
¡û
>W121086811
AKKK01000020
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
7712
7641
-
Cys
GCA
[ENA]
¡û
>W1610050331
BBFS01000128
Actinomycetota
Paenarthrobacter nitroguajacolicus JCM 14115 [BBFS]
8622
8551
-
Cys
GCA
[ENA]
¡û
>W1610081913
BDDW01000034
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
20372
20445
+
Cys
GCA
[ENA]
¡û
>C131002343
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
394981
394910
-
Cys
GCA
[Ensembl]
¡û
>W1610737955
LMON01000006
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
122655
122728
+
Cys
GCA
[ENA]
¡û
>W1610774472
LNUV01000006
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
911310
911239
-
Cys
GCA
[ENA]
¡û
>W1710046730
BBFS01000128
Actinomycetota
Paenarthrobacter nitroguajacolicus JCM 14115 [BBFS]
8622
8551
-
Cys
GCA
[ENA]
¡û
>W1710080628
BDDW01000034
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
20372
20445
+
Cys
GCA
[ENA]
¡û
>W1710508517
FMWE01000005
Actinomycetota
Arthrobacter sp. UNCCL28 [FMWE]
236668
236597
-
Cys
GCA
[ENA]
¡û
>W1710518920
FNEI01000009
Actinomycetota
Arthrobacter cupressi [FNEI]
160036
160107
+
Cys
GCA
[ENA]
¡û
>W1710529032
FNNR01000013
Actinomycetota
Arthrobacter sp. cf158 [FNNR]
4124
4051
-
Cys
GCA
[ENA]
¡û
>W1710541447
FNYI01000006
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
53198
53271
+
Cys
GCA
[ENA]
¡û
>W1710603462
FUZB01000019
Actinomycetota
Arthrobacter sp. 31Cvi3.1E [FUZB]
10054
9981
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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