This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.449074 (83 seq.)
>W131171933
ARGO01000030
Bacillota
Paenibacillus sanguinis 2301083 = DSM 16941 [ARGO]
173979
173909
-
Gly
CCC
[ENA]
¡û
>W131176741
ARKG01000105
Bacillota
Cohnella laeviribosi DSM 21336 [ARKG]
23436
23509
+
Gly
CCC
[ENA]
¡û
>W131251959
CBLK010000072
Bacillota
Paenibacillus antibioticophila GD11 [CBLK]
8366
8293
-
Gly
CCC
[ENA]
¡û
>W1711418066
MHHN01000004
Bacillota
Paenibacillus sp. RIFOXYA1_FULL_44_5 [MHHN]
370
297
-
Gly
CCC
[ENA]
¡û
>W1711677156
MRTH01000052
Bacillota
Paenibacillus sp. FSL H7-0331 [MRTH]
31306
31236
-
Gly
CCC
[ENA]
¡û
>W1711677687
MRTR01000010
Bacillota
Paenibacillus macerans [MRTR]
105609
105536
-
Gly
CCC
[ENA]
¡û
>W141251567
CBQR020000085
Bacillota
Gorillibacterium massiliense G5 [CBQR]
40579
40652
+
Gly
CCC
[ENA]
¡û
>W141276261
JADQ01000037
Bacillota
Paenibacillus sp. J14 [JADQ]
33945
33872
-
Gly
CCC
[ENA]
¡û
>WENV183729187
PJTQ01009577
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
225
152
-
Gly
CCC
[ENA]
¡û
>WENV170705607
LNAP01000013
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
125300
125373
+
Gly
CCC
[ENA]
¡û
>WENV170705779
LNAP01000267
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
49190
49263
+
Gly
CCC
[ENA]
¡û
>W141462430
JFHT01000068
Bacillota
Paenibacillus darwinianus [JFHT]
2005
1932
-
Gly
CCC
[ENA]
¡û
>W141462452
JFHU01000098
Bacillota
Paenibacillus darwinianus [JFHU]
2023
1950
-
Gly
CCC
[ENA]
¡û
>W141462472
JFHV01000051
Bacillota
Paenibacillus darwinianus [JFHV]
2003
1930
-
Gly
CCC
[ENA]
¡û
>C181169874
CP028922
Bacillota
Paenibacillus sp. CAA11 [CP028922]
3692053
3691983
-
Gly
CCC
-
¡û
>C191007174
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
623758
623688
-
Gly
CCC
-
¡û
>C191007721
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
2206678
2206605
-
Gly
CCC
-
¡û
>C191123473
CP034346
Bacillota
Paenibacillus lutimineralis MBLB1234 [CP034346]
5280337
5280410
+
Gly
CCC
-
¡û
>C191143948
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
188881
188808
-
Gly
CCC
-
¡û
>W09125293
ACIH01000143
Bacillota
Paenibacillus sp. oral taxon 786 oral taxon 786 str. D14 [ACIH]
13971
13898
-
Gly
CCC
[ENA]
¡û
>W141711633
JMQA01000019
Bacillota
Paenibacillus macerans [JMQA]
13380
13307
-
Gly
CCC
[ENA]
¡û
>W1910126274
BGML01000010
Bacillota
Paenibacillus macerans DSM 24746 [BGML]
205568
205495
-
Gly
CCC
[ENA]
¡û
>W1910126368
BGMM01000011
Bacillota
Paenibacillus macerans JCM 17693 [BGMM]
205565
205492
-
Gly
CCC
[ENA]
¡û
>W1910154763
BIMA01000077
Bacillota
Paenibacillus koleovorans NBRC 103111 [BIMA]
31030
31100
+
Gly
CCC
[ENA]
¡û
>W1910155064
BIMG01000129
Bacillota
Paenibacillus macerans NBRC 15307 [BIMG]
7726
7799
+
Gly
CCC
[ENA]
¡û
>W1910692564
MDDO01000023
Bacillota
Paenibacillus aceti L14 [MDDO]
9482
9555
+
Gly
CCC
[ENA]
¡û
>W1810697167
QLUW01000001
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
1166554
1166481
-
Gly
CCC
[ENA]
¡û
>W1810701747
QMFB01000003
Bacillota
Paenibacillus contaminans CKOBP-6 [QMFB]
418609
418536
-
Gly
CCC
[ENA]
¡û
>W1810787732
QRDY01000003
Bacillota
Cohnella lupini CECT 8236 [QRDY]
364621
364548
-
Gly
CCC
[ENA]
¡û
>C151075924
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
3897629
3897556
-
Gly
CCC
[Ensembl]
¡û
>W2010080358
BGML01000010
Bacillota
Paenibacillus macerans DSM 24746 [BGML]
205568
205495
-
Gly
CCC
[ENA]
¡û
>W2010080452
BGMM01000011
Bacillota
Paenibacillus macerans JCM 17693 [BGMM]
205565
205492
-
Gly
CCC
[ENA]
¡û
>W2010087698
BIMA01000077
Bacillota
Paenibacillus koleovorans NBRC 103111 [BIMA]
31030
31100
+
Gly
CCC
[ENA]
¡û
>W2010087999
BIMG01000129
Bacillota
Paenibacillus macerans NBRC 15307 [BIMG]
7726
7799
+
Gly
CCC
[ENA]
¡û
>W2010270336
CABKSR020000004
Bacillota
Paenibacillus antibioticophila [CABKSR]
64167
64094
-
Gly
CCC
[ENA]
¡û
>W2010274443
CABKVL020000016
Bacillota
Paenibacillus rubinfantis [CABKVL]
64666
64739
+
Gly
CCC
[ENA]
¡û
>W2010274607
CABKVN020000012
Bacillota
Paenibacillus senegalimassiliensis [CABKVN]
354989
354919
-
Gly
CCC
[ENA]
¡û
>W2010275509
CABKWD020000009
Bacillota
Paenibacillaceae bacterium [CABKWD]
79380
79453
+
Gly
CCC
[ENA]
¡û
>W2010716004
JACHXC010000001
Bacillota
Paenibacillus baekrokdamisoli CECT 8890 [JACHXC]
662927
662997
+
Gly
CCC
[ENA]
¡û
>W2010716510
JACHXK010000003
Bacillota
Paenibacillus phyllosphaerae CECT 5862 [JACHXK]
393937
393867
-
Gly
CCC
[ENA]
¡û
>W2010741072
JACJIP010000041
Bacillota
Fontibacillus solani CECT 8693 [JACJIP]
4695
4622
-
Gly
CCC
[ENA]
¡û
>W2010743466
JACJVN010000033
Bacillota
Cohnella lubricantis DSM 103658 [JACJVN]
126911
126838
-
Gly
CCC
[ENA]
¡û
>W2010743583
JACJVP010000026
Bacillota
Cohnella nanjingensis DSM 28246 [JACJVP]
31434
31507
+
Gly
CCC
[ENA]
¡û
>W2010826378
MDDO01000023
Bacillota
Paenibacillus aceti L14 [MDDO]
9482
9555
+
Gly
CCC
[ENA]
¡û
>W2011260237
QJOT01000009
Bacillota
Paenibacillus sp. 79R4 [QJOT]
187195
187122
-
Gly
CCC
[ENA]
¡û
>W2011485006
RRCN01000001
Bacillota
Paenibacillus sp. KCOM 3021 [RRCN]
69911
69984
+
Gly
CCC
[ENA]
¡û
>W2011512300
RZJR01000004
Bacillota
Cohnella sp. AR92 [RZJR]
64153
64080
-
Gly
CCC
[ENA]
¡û
>W2011513238
RZNY01000001
Bacillota
Paenibacillus anaericanus DSM 15890 [RZNY]
187863
187933
+
Gly
CCC
[ENA]
¡û
>W2011580837
SHLX01000011
Bacillota
Paenibacillus sp. R196 [SHLX]
236211
236284
+
Gly
CCC
[ENA]
¡û
>W2011662856
SOMN01000002
Bacillota
Cohnella luojiensis CCTCC AB 208254 [SOMN]
117767
117694
-
Gly
CCC
[ENA]
¡û
>W2011691744
SSOB01000003
Bacillota
Cohnella sp. CC-MHH1044 [SSOB]
127283
127210
-
Gly
CCC
[ENA]
¡û
>W2011834355
UGSI01000002
Bacillota
Paenibacillus macerans NCTC6355 [UGSI]
1670558
1670485
-
Gly
CCC
[ENA]
¡û
>W2012098259
VNJJ01000012
Bacillota
Cohnella sp. G13 [VNJJ]
478
405
-
Gly
CCC
[ENA]
¡û
>W2012402334
WNZZ01000053
Bacillota
Paenibacillus macerans 3CT49 [WNZZ]
13361
13288
-
Gly
CCC
[ENA]
¡û
>W2110023038
BMFT01000003
Bacillota
Paenibacillus segetis CGMCC 1.12769 [BMFT]
66058
66131
+
Gly
CCC
[ENA]
¡û
>W2110024234
BMGR01000016
Bacillota
Paenibacillus abyssi CGMCC 1.12987 [BMGR]
84819
84892
+
Gly
CCC
[ENA]
¡û
>W2110025421
BMHP01000001
Bacillota
Paenibacillus nasutitermitis CGMCC 1.15178 [BMHP]
1180215
1180142
-
Gly
CCC
[ENA]
¡û
>W2110066572
BORR01000015
Bacillota
Paenibacillus antibioticophila J41TS12 [BORR]
123296
123366
+
Gly
CCC
[ENA]
¡û
>W2110066619
BORS01000011
Bacillota
Paenibacillus apis J41TS4 [BORS]
143825
143895
+
Gly
CCC
[ENA]
¡û
>W2110067479
BOSD01000007
Bacillota
Paenibacillus macerans J1TS5 [BOSD]
188803
188730
-
Gly
CCC
[ENA]
¡û
>W2110497767
JAFHKM010000002
Bacillota
Cohnella algarum Pch-40 [JAFHKM]
6067879
6067806
-
Gly
CCC
[ENA]
¡û
>W2110539238
JAGGKW010000002
Bacillota
Cohnella thailandensis DSM 25241 [JAGGKW]
81454
81381
-
Gly
CCC
[ENA]
¡û
>W2110539434
JAGGLB010000041
Bacillota
Paenibacillus eucommiae DSM 26048 [JAGGLB]
47712
47785
+
Gly
CCC
[ENA]
¡û
>W2110560792
JAGKSP010000001
Bacillota
Paenibacillus sp. DLE-14 [JAGKSP]
409049
409122
+
Gly
CCC
[ENA]
¡û
>W2110622698
JAHLQJ010000029
Bacillota
Paenibacillus sp. MSJ-6 [JAHLQJ]
30961
30888
-
Gly
CCC
[ENA]
¡û
>W2110664146
JAHZIK010000099
Bacillota
Paenibacillus sepulcri CCM 7311 [JAHZIK]
2113
2040
-
Gly
CCC
[ENA]
¡û
>W2110690670
JAIOGQ010000018
Bacillota
Paenibacillus sp. 81-11 [JAIOGQ]
23738
23665
-
Gly
CCC
[ENA]
¡û
>C201250839
CP051680
Bacillota
Cohnella sp. MFER-1 [CP051680]
50536
50463
-
Gly
CCC
-
¡û
>C211380378
CP080545
Bacillota
Paenibacillus sp. sptzw28 [CP080545]
2447182
2447109
-
Gly
CCC
-
¡û
>C231227607
CP086393
Bacillota
Paenibacillus macerans I6 [CP086393]
6689527
6689600
+
Gly
CCC
-
¡û
>C231298483
CP091430
Bacillota
Paenibacillus sp. PHS-Z3 [CP091430]
4902443
4902516
+
Gly
CCC
-
¡û
>C231620129
CP119317
Bacillota
Cohnella sp. [CP119317]
1041041
1041114
+
Gly
CCC
-
¡û
>W2130001183
BMIW01000004
Bacillota
Paenibacillus aceti CGMCC 1.15420 [BMIW]
150994
151067
+
Gly
CCC
[ENA]
¡û
>C241306449
CP133017
Bacillota
Paenibacillus silvisoli TW38 [CP133017]
4332965
4333038
+
Gly
CCC
-
¡û
>C241310793
CP133605
Bacillota
Paenibacillus sp. D2_2 [CP133605]
4549113
4549186
+
Gly
CCC
-
¡û
>W1510562737
CTEK01000009
Bacillota
Paenibacillus sp. GM2 [CTEK]
79380
79453
+
Gly
CCC
[ENA]
¡û
>W1511499723
JXAL01000009
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
3653
3580
-
Gly
CCC
[ENA]
¡û
>W1610163980
FAUP01000012
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
354989
354919
-
Gly
CCC
[ENA]
¡û
>W1710165647
FAUP01000012
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
354989
354919
-
Gly
CCC
[ENA]
¡û
>W1710511810
FMYY01000001
Bacillota
Paenibacillus sp. cl123 [FMYY]
47295
47225
-
Gly
CCC
[ENA]
¡û
>W1710514834
FNBG01000008
Bacillota
Fontibacillus panacisegetis [FNBG]
62463
62536
+
Gly
CCC
[ENA]
¡û
>W1710529252
FNNV01000013
Bacillota
Paenibacillus sp. CF384 [FNNV]
122129
122059
-
Gly
CCC
[ENA]
¡û
>W1710576613
FPAD01000001
Bacillota
Paenibacillus sp. BC26 [FPAD]
1205300
1205227
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK