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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44928 (101 seq.)
>W131223967
AUCL01000001
Actinomycetota
Bifidobacterium tsurumiense DSM 17777 [AUCL]
24448
24363
-
Ser
TGA
[ENA]
¡û
>W1711540068
MLZL01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis [MLZL]
79764
79676
-
Ser
TGA
[ENA]
¡û
>W131232731
AUJM01000011
Actinomycetota
Bifidobacterium sp. AGR2158 [AUJM]
429382
429295
-
Ser
TGA
[ENA]
¡û
>WENV180217432
OBAR01001629
[OBAR] human gut metagenome; human gut
12622
12710
+
Ser
TGA
[ENA]
¢þ
>WENV180278460
OBHX01004270
[OBHX] metagenome; feces
4423
4511
+
Ser
TGA
[ENA]
¢þ
>WENV180332884
OBLF01000022
[OBLF] metagenome; feces
9502
9414
-
Ser
TGA
[ENA]
¢þ
>WENV180347950
OBLO01002044
[OBLO] metagenome; feces
13257
13345
+
Ser
TGA
[ENA]
¢þ
>WENV180443564
OBWY01015184
[OBWY] human gut metagenome; faeces
399
487
+
Ser
TGA
[ENA]
¢þ
>WENV180495850
OCAC01000018
[OCAC] human gut metagenome; faeces
61117
61029
-
Ser
TGA
[ENA]
¢þ
>WENV180598610
OCPN01000003
[OCPN] human gut metagenome; faeces
75321
75409
+
Ser
TGA
[ENA]
¢þ
>WENV181435193
OGDF01002648
[OGDF] human gut metagenome; human gut
7412
7500
+
Ser
TGA
[ENA]
¢þ
>WENV181439928
OGDN01000335
[OGDN] human gut metagenome; human gut
23167
23079
-
Ser
TGA
[ENA]
¢þ
>W141169160
AXVO01000014
Actinomycetota
Bifidobacterium choerinum DSM 20434 [AXVO]
52250
52163
-
Ser
TGA
[ENA]
¡û
>W08009139
ABOT01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
216202
216117
-
Ser
TGA
[ENA]
¡û
>WENV181752500
OGQQ01006670
[OGQQ] human gut metagenome; faeces
2781
2869
+
Ser
TGA
[ENA]
¢þ
>WENV181780127
OGRI01082390
[OGRI] human gut metagenome; faeces
59
147
+
Ser
TGA
[ENA]
¢þ
>WENV182340217
OIAD01041320
[OIAD] human gut metagenome; feces
262
350
+
Ser
TGA
[ENA]
¢þ
>W141258194
CBWX010000073
Actinomycetota
Bifidobacterium animalis subsp. lactis CECT 8145 [CBWX]
1361876
1361964
+
Ser
TGA
[ENA]
¡û
>WENV183106621
OLNL01019763
[OLNL] human gut metagenome; faeces
398
486
+
Ser
TGA
[ENA]
¢þ
>WENV183133009
OLOB01017539
[OLOB] human gut metagenome; faeces
1237
1149
-
Ser
TGA
[ENA]
¢þ
>WENV183136020
OLOF01000003
[OLOF] human gut metagenome; faeces
149618
149530
-
Ser
TGA
[ENA]
¢þ
>WENV183147287
OLON01000048
[OLON] human gut metagenome; faeces
75323
75411
+
Ser
TGA
[ENA]
¢þ
>WENV183171316
OLPC01000031
[OLPC] human gut metagenome; faeces
79609
79521
-
Ser
TGA
[ENA]
¢þ
>WENV183174030
OLPE01000166
[OLPE] human gut metagenome; faeces
64503
64591
+
Ser
TGA
[ENA]
¢þ
>WENV183188579
OLPP01003195
[OLPP] human gut metagenome; faeces
550
638
+
Ser
TGA
[ENA]
¢þ
>WENV183291376
OLSI01001257
[OLSI] human gut metagenome; faeces
10879
10791
-
Ser
TGA
[ENA]
¢þ
>WENV183297828
OLSM01011617
[OLSM] human gut metagenome; faeces
1683
1771
+
Ser
TGA
[ENA]
¢þ
>WENV183500441
OMGQ01014836
[OMGQ] human gut metagenome; human gut
700
612
-
Ser
TGA
[ENA]
¢þ
>WENV183792904
PPYF01465182
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1514
1426
-
Ser
TGA
[ENA]
¢þ
>C181023452
CP017098
Actinomycetota
Bifidobacterium animalis BL3 [CP017098]
499037
498949
-
Ser
TGA
-
¡û
>C181030123
CP018044
Actinomycetota
Bifidobacterium choerinum FMB-1 [CP018044]
1184814
1184900
+
Ser
TGA
-
¡û
>C181071809
CP022724
Actinomycetota
Bifidobacterium animalis subsp. lactis S7 [CP022724]
1001087
1000999
-
Ser
TGA
-
¡û
>C191057564
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
521580
521491
-
Ser
TGA
-
¡û
>W141523667
JGYM01000002
Actinomycetota
Bifidobacterium animalis subsp. animalis [JGYM]
153275
153186
-
Ser
TGA
[ENA]
¡û
>C191073878
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
498851
498763
-
Ser
TGA
-
¡û
>W141524095
JGYU01000011
Actinomycetota
Bifidobacterium choerinum [JGYU]
33700
33613
-
Ser
TGA
[ENA]
¡û
>C191078840
CP031703
Actinomycetota
Bifidobacterium animalis subsp. lactis IDCC4301 [CP031703]
1673394
1673482
+
Ser
TGA
-
¡û
>W141525358
JGZU01000015
Actinomycetota
Bifidobacterium tsurumiense [JGZU]
24731
24646
-
Ser
TGA
[ENA]
¡û
>C191144131
CP035497
Actinomycetota
Bifidobacterium animalis 01 [CP035497]
498984
498896
-
Ser
TGA
-
¡û
>W1910179773
BJKG01000010
Actinomycetota
Bifidobacterium animalis J063 [BJKG]
123646
123734
+
Ser
TGA
[ENA]
¡û
>W1910179813
BJKH01000011
Actinomycetota
Bifidobacterium animalis J218 [BJKH]
805407
805495
+
Ser
TGA
[ENA]
¡û
>W1910179843
BJKI01000001
Actinomycetota
Bifidobacterium animalis J231 [BJKI]
123657
123745
+
Ser
TGA
[ENA]
¡û
>W1910342694
FTRE01000001
Actinomycetota
Bifidobacterium animalis [FTRE]
216399
216311
-
Ser
TGA
[ENA]
¡û
>W1910343313
FTRP01000001
Actinomycetota
Bifidobacterium animalis [FTRP]
216400
216312
-
Ser
TGA
[ENA]
¡û
>C141002675
CP003941
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [CP003941]
503409
503321
-
Ser
TGA
[Ensembl]
¡û
>W1910814872
MVOG01000042
Actinomycetota
Bifidobacterium italicum 70 [MVOG]
14369
14455
+
Ser
TGA
[ENA]
¡û
>C09101022
CP001213
Actinomycetota
Bifidobacterium animalis subsp. lactis AD011 [CP001213]
498569
498481
-
Ser
TGA
[Ensembl]
¡û
>C09101071
CP001515
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl-04 Bl-04; ATCC SD5219 [CP001515]
498981
498893
-
Ser
TGA
[Ensembl]
¡û
>C09101119
CP001606
Actinomycetota
Bifidobacterium animalis subsp. lactis DSM 10140 [CP001606]
498982
498894
-
Ser
TGA
[Ensembl]
¡û
>W1910910813
NHMR02000001
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [NHMR]
972115
972204
+
Ser
TGA
[ENA]
¡û
>W1910923011
NIGQ01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_2 [NIGQ]
604230
604318
+
Ser
TGA
[ENA]
¡û
>W1910923060
NIGR01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_1 [NIGR]
604230
604318
+
Ser
TGA
[ENA]
¡û
>W1911079607
NMYC01000005
Actinomycetota
Bifidobacterium anseris 72 [NMYC]
623097
623183
+
Ser
TGA
[ENA]
¡û
>W1911768220
QXGI01000010
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
44042
43956
-
Ser
TGA
[ENA]
¡û
>W1810084955
PESQ01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [PESQ]
75320
75408
+
Ser
TGA
[ENA]
¡û
>W1810121971
PHUS01000004
Actinomycetota
Bifidobacterium animalis subsp. lactis BM 25 [PHUS]
79762
79674
-
Ser
TGA
[ENA]
¡û
>W1810541581
QDIK01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis DS28_2 [QDIK]
165161
165073
-
Ser
TGA
[ENA]
¡û
>W1810541636
QDIL01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
165137
165049
-
Ser
TGA
[ENA]
¡û
>W1810541723
QDIN01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis DS24_2 [QDIN]
274133
274221
+
Ser
TGA
[ENA]
¡û
>W1810541771
QDIO01000016
Actinomycetota
Bifidobacterium animalis subsp. lactis DS23_2 [QDIO]
5150
5062
-
Ser
TGA
[ENA]
¡û
>W1810541830
QDIP01000002
Actinomycetota
Bifidobacterium animalis DS2_2 [QDIP]
165142
165054
-
Ser
TGA
[ENA]
¡û
>W1810541930
QDIR01000002
Actinomycetota
Bifidobacterium animalis DS15_2 [QDIR]
165135
165047
-
Ser
TGA
[ENA]
¡û
>W1810542013
QDIT01000001
Actinomycetota
Bifidobacterium animalis DS11_2 [QDIT]
805373
805461
+
Ser
TGA
[ENA]
¡û
>W1810542062
QDIU01000001
Actinomycetota
Bifidobacterium animalis DS1_2 [QDIU]
805374
805462
+
Ser
TGA
[ENA]
¡û
>W1810542109
QDIV01000012
Actinomycetota
Bifidobacterium animalis subsp. lactis CF3_2 [QDIV]
104903
104991
+
Ser
TGA
[ENA]
¡û
>W1810542307
QDIZ01000004
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
165134
165046
-
Ser
TGA
[ENA]
¡û
>W1810837816
QSSU01000003
Actinomycetota
Bifidobacterium animalis TF04-14 [QSSU]
149609
149521
-
Ser
TGA
[ENA]
¡û
>W1810839878
QSUF01000002
Actinomycetota
Bifidobacterium animalis OM05-7AA [QSUF]
75297
75385
+
Ser
TGA
[ENA]
¡û
>C151024228
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
535044
535131
+
Ser
TGA
[Ensembl]
¡û
>C151026494
CP007522
Actinomycetota
Bifidobacterium animalis subsp. lactis KLDS2.0603 [CP007522]
498815
498727
-
Ser
TGA
[Ensembl]
¡û
>C151033715
CP007755
Actinomycetota
Bifidobacterium animalis RH [CP007755]
499340
499252
-
Ser
TGA
[Ensembl]
¡û
>C151042237
CP009045
Actinomycetota
Bifidobacterium animalis subsp. lactis BF052 [CP009045]
498816
498728
-
Ser
TGA
[Ensembl]
¡û
>C151068808
CP010433
Actinomycetota
Bifidobacterium animalis A6 [CP010433]
498983
498895
-
Ser
TGA
[Ensembl]
¡û
>C10101324
CP001853
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [CP001853]
1134415
1134327
-
Ser
TGA
[Ensembl]
¡û
>C10101375
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
498983
498895
-
Ser
TGA
[Ensembl]
¡û
>C11101931
CP003039
Actinomycetota
Bifidobacterium animalis subsp. lactis BLC1 [CP003039]
498977
498889
-
Ser
TGA
[Ensembl]
¡û
>C11101980
CP002915
Actinomycetota
Bifidobacterium animalis subsp. lactis CNCM I-2494 [CP002915]
498987
498899
-
Ser
TGA
[Ensembl]
¡û
>C121002638
CP002567
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 25527 [CP002567]
521700
521611
-
Ser
TGA
[Ensembl]
¡û
>C121013674
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
498980
498892
-
Ser
TGA
[Ensembl]
¡û
>C121013723
CP003498
Actinomycetota
Bifidobacterium animalis subsp. lactis Bi-07 [CP003498]
498982
498894
-
Ser
TGA
[Ensembl]
¡û
>C161087462
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
968383
968294
-
Ser
TGA
[Ensembl]
¡û
>W121031664
AHGW01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
560857
560769
-
Ser
TGA
[ENA]
¡û
>W1610027721
AWFK01000015
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
73725
73814
+
Ser
TGA
[ENA]
¡û
>W1610027764
AWFL01000006
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27536 [AWFL]
164908
164820
-
Ser
TGA
[ENA]
¡û
>W1610027811
AWFM01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27674 [AWFM]
164918
164830
-
Ser
TGA
[ENA]
¡û
>W1610027843
AWFN01000003
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
706320
706409
+
Ser
TGA
[ENA]
¡û
>W1610027911
AWFO01000006
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
148014
147925
-
Ser
TGA
[ENA]
¡û
>W1610027956
AWFP01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [AWFP]
128271
128359
+
Ser
TGA
[ENA]
¡û
>W1610027995
AWFQ01000001
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 27672 [AWFQ]
572895
572806
-
Ser
TGA
[ENA]
¡û
>W1610083145
CBUQ010000007
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
81480
81391
-
Ser
TGA
[ENA]
¡û
>C131012163
CP004053
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl12 [CP004053]
498845
498757
-
Ser
TGA
[Ensembl]
¡û
>W1610518802
JDTR01000004
Actinomycetota
Bifidobacterium tsurumiense DSM 17777 [JDTR]
129601
129686
+
Ser
TGA
[ENA]
¡û
>W1610519178
JDTZ01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
375745
375658
-
Ser
TGA
[ENA]
¡û
>W1610519627
JDUJ01000010
Actinomycetota
Bifidobacterium choerinum DSM 20434 [JDUJ]
58672
58759
+
Ser
TGA
[ENA]
¡û
>W1710023929
AWFK01000015
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
73725
73814
+
Ser
TGA
[ENA]
¡û
>W1710023953
AWFN01000003
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
706320
706409
+
Ser
TGA
[ENA]
¡û
>W1710024021
AWFO01000006
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
148014
147925
-
Ser
TGA
[ENA]
¡û
>W1710088265
CBUQ010000007
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
81480
81391
-
Ser
TGA
[ENA]
¡û
>W1710614322
JDTR01000004
Actinomycetota
Bifidobacterium tsurumiense DSM 17777 [JDTR]
129601
129686
+
Ser
TGA
[ENA]
¡û
>W1710614633
JDTZ01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
375745
375658
-
Ser
TGA
[ENA]
¡û
>W1710615082
JDUJ01000010
Actinomycetota
Bifidobacterium choerinum DSM 20434 [JDUJ]
58672
58759
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK